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Single-cell spatial landscapes of the lung tumour immune microenvironment

Authors :
Mark Sorin
Morteza Rezanejad
Elham Karimi
Benoit Fiset
Lysanne Desharnais
Lucas J. M. Perus
Simon Milette
Miranda W. Yu
Sarah M. Maritan
Samuel Doré
Émilie Pichette
William Enlow
Andréanne Gagné
Yuhong Wei
Michele Orain
Venkata S. K. Manem
Roni Rayes
Peter M. Siegel
Sophie Camilleri-Broët
Pierre Olivier Fiset
Patrice Desmeules
Jonathan D. Spicer
Daniela F. Quail
Philippe Joubert
Logan A. Walsh
Publication Year :
2022
Publisher :
Zenodo, 2022.

Abstract

We updated our data set, please use the new version (md5:e33079d5299cdc17f37b9f5e4c08be12). All data supporting the findings of the publication "Single-cell spatial landscapes of the lung tumour immune microenvironment", including masks of high-dimension tif images, single-cell segmentation, single-cell cell types, and patient data. The code used to produce the results of this study is available athttps://github.com/walsh-quail-labs/IMC-Lung. Channel index names: Channel Name Channel Index CD117 1 CD11c 2 CD14 3 CD163 4 CD16 5 CD20 6 CD31 7 CD3 8 CD4 9 CD68 10 CD8a 11 CD94 12 DNA1 13 FoxP3 14 HLA-DR 15 Histone H3 16 MPO 17 Pancytokeratin 18 TTF1 19

Details

Language :
English
Database :
OpenAIRE
Accession number :
edsair.doi.dedup.....1b8b7ab0452c8fa442f4dc9481d9cea7
Full Text :
https://doi.org/10.5281/zenodo.7383627