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High-resolution solid-state NMR structure of Alanyl-Prolyl-Glycine

Authors :
Loren B. Andreas
Mikhail Veshtort
Robert G. Griffin
Matthias Huber
Manish A. Mehta
Ramesh Ramachandran
Patrick C.A. van der Wel
Alexander B. Barnes
Source :
Journal of Magnetic Resonance. 200:95-100
Publication Year :
2009
Publisher :
Elsevier BV, 2009.

Abstract

We present a de novo high-resolution structure of the peptide Alanyl-Prolyl-Glycine using a combination of sensitive solid-state NMR techniques that each yield precise structural constraints. High-quality (13)C-(13)C distance constraints are extracted by fitting rotational resonance width (R(2)W) experiments using Multimode Multipole Floquet Theory and experimental chemical shift anisotropy (CSA) orientations. In this strategy, a structure is first calculated using DANTE-REDOR and torsion angle measurements and the resulting relative CSA orientations are used as an input parameter in the (13)C-(13)C distance calculations. Finally, a refined structure is calculated using all the constraints. We investigate the effect of different structural constraints on structure quality, as determined by comparison to the crystal structure and also self-consistency of the calculated structures. Inclusion of all or subsets of these constraints into CNS calculations resulted in high-quality structures (0.02A backbone RMSD using all 11 constraints).

Details

ISSN :
10907807
Volume :
200
Database :
OpenAIRE
Journal :
Journal of Magnetic Resonance
Accession number :
edsair.doi.dedup.....1b4def42252fe69031de02d33aa40b83
Full Text :
https://doi.org/10.1016/j.jmr.2009.06.009