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High-resolution solid-state NMR structure of Alanyl-Prolyl-Glycine
- Source :
- Journal of Magnetic Resonance. 200:95-100
- Publication Year :
- 2009
- Publisher :
- Elsevier BV, 2009.
-
Abstract
- We present a de novo high-resolution structure of the peptide Alanyl-Prolyl-Glycine using a combination of sensitive solid-state NMR techniques that each yield precise structural constraints. High-quality (13)C-(13)C distance constraints are extracted by fitting rotational resonance width (R(2)W) experiments using Multimode Multipole Floquet Theory and experimental chemical shift anisotropy (CSA) orientations. In this strategy, a structure is first calculated using DANTE-REDOR and torsion angle measurements and the resulting relative CSA orientations are used as an input parameter in the (13)C-(13)C distance calculations. Finally, a refined structure is calculated using all the constraints. We investigate the effect of different structural constraints on structure quality, as determined by comparison to the crystal structure and also self-consistency of the calculated structures. Inclusion of all or subsets of these constraints into CNS calculations resulted in high-quality structures (0.02A backbone RMSD using all 11 constraints).
- Subjects :
- Models, Molecular
Floquet theory
Carbon Isotopes
Nuclear and High Energy Physics
Magnetic Resonance Spectroscopy
Models, Statistical
Protein Conformation
Chemistry
Biophysics
Crystal structure
Dihedral angle
Crystallography, X-Ray
Condensed Matter Physics
Biochemistry
Article
Crystallography
Quality (physics)
Solid-state nuclear magnetic resonance
Yield (chemistry)
Multipole expansion
Anisotropy
Oligopeptides
Subjects
Details
- ISSN :
- 10907807
- Volume :
- 200
- Database :
- OpenAIRE
- Journal :
- Journal of Magnetic Resonance
- Accession number :
- edsair.doi.dedup.....1b4def42252fe69031de02d33aa40b83
- Full Text :
- https://doi.org/10.1016/j.jmr.2009.06.009