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Micro-computed tomography: Introducing new dimensions to taxonomy
- Source :
- ZooKeys, ZooKeys 263: 1-45, ZooKeys, Vol 263, Iss 0, Pp 1-45 (2013)
- Publication Year :
- 2013
- Publisher :
- Pensoft Publishers, 2013.
-
Abstract
- Continuous improvements in the resolution of three-dimensional imaging have led to an increased application of these techniques in conventional taxonomic research in recent years. Coupled with an ever increasing research effort in cybertaxonomy, three-dimensional imaging could give a boost to the development of virtual specimen collections, allowing rapid and simultaneous access to accurate virtual representations of type material. This paper explores the potential of micro-computed tomography (X-ray micro-tomography), a non-destructive three-dimensional imaging technique based on mapping X-ray attenuation in the scanned object, for supporting research in systematics and taxonomy. The subsequent use of these data as virtual type material, so-called “cybertypes”, and the creation of virtual collections lie at the core of this potential. Sample preparation, image acquisition, data processing and presentation of results are demonstrated using polychaetes (bristle worms), a representative taxon of macro-invertebrates, as a study object. Effects of the technique on the morphological, anatomical and molecular identity of the specimens are investigated. The paper evaluates the results and discusses the potential and the limitations of the technique for creating cybertypes. It also discusses the challenges that the community might face to establish virtual collections. Potential future applications of three-dimensional information in taxonomic research are outlined, including an outlook to new ways of producing, disseminating and publishing taxonomic information.
- Subjects :
- 0106 biological sciences
Computer science
ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION
Bioinformatics
010603 evolutionary biology
01 natural sciences
Article
03 medical and health sciences
taxonomy
visualisation
Type (biology)
Taxonomy (general)
lcsh:Zoology
lcsh:QL1-991
systematics
Ecology, Evolution, Behavior and Systematics
030304 developmental biology
0303 health sciences
Data processing
Micro-computed tomography
Information retrieval
Object (computer science)
cybertypes
Study Object
Visualization
interactive PDF
Specimen collection
polychaetes
Identity (object-oriented programming)
Animal Science and Zoology
cybertaxonomy
3D
Subjects
Details
- Language :
- English
- ISSN :
- 13132970 and 13132989
- Issue :
- 263
- Database :
- OpenAIRE
- Journal :
- ZooKeys
- Accession number :
- edsair.doi.dedup.....1807530274387ffff05238e084b5a1b4