Structural and Molecular Dynamics Analysis of Plant Serotonin N ‐Acetyltransferase Reveal an Acid/Base‐Assisted Catalysis in Melatonin Biosynthesis

Serotonin N -acetyltransferase (SNAT) is the key rate-limiting enzyme in melatonin biosynthesis. SNAT mediates dual pathways of melatonin biosynthesis in plants by using serotonin and 5-methoxytryptamine (5-MT) as substrates, and a high reaction pH and temperature are essential to its activity. However, little is known of its underlying mechanisms. Herein, we present a detailed reaction mechanism of a SNAT from Oryza sativa through combined structural and molecular dynamics (MD) analysis. We report for the first time the crystal structures of plant SNAT in the apo and binary/ternary complex forms with acetyl-CoA (AcCoA), serotonin, and 5-MT. These structures reveal that Os SNAT exhibits a unique enzymatically active dimeric fold that is not found in all the known structures of arylalkylamine N-acetyltransferase (AANAT) family. The key residues W188, D189, D226, N220, and Y233 located around the active pocket have important role in catalysis which is subsequently confirmed by site-directed mutagenesis. Combined with MD simulations, we hypothesize a novel plausible catalytic mechanism in which D226 and Y233 function as catalytic base and acid during the acetyl-transfer reaction. This work provides a molecular framework for understanding the catalytic mechanisms of plant SNAT and has implications for future protein engineering and biocatalytic applications.