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Ketobacter alkanivorans gen. nov., sp. nov., an n-alkane-degrading bacterium isolated from seawater
- Source :
- International Journal of Systematic and Evolutionary Microbiology. 68:2258-2264
- Publication Year :
- 2018
- Publisher :
- Microbiology Society, 2018.
-
Abstract
- Strain GI5T was isolated from a surface seawater sample collected from Garorim Bay (West Sea, Republic of Korea). The isolated strain was aerobic, Gram-stain-negative, rod-shaped, motile by means of a polar flagellum, negative for catalase and weakly positive for oxidase. The optimum growth pH, salinity and temperature were determined to be pH 7.5–8.0, 3 % NaCl (w/v) and 25 °C, respectively; the growth ranges were pH 6.0–9.0, 1–7 % NaCl (w/v) and 18–40 °C. The results of phylogenetic analysis of 16S rRNA gene sequences indicated that GI5T clustered within the family Alcanivoracaceae , and most closely with Alcanivorax dieselolei B-5T and Alcanivorax marinus R8-12T (91.9 % and 91.6 % similarity, respectively). The major cellular fatty acids in GI5T were C18 : 1ω7c/C18 : 1ω6c (44.45 %), C16 : 1ω6c/C16 : 1ω7c (14.17 %) and C16 : 0 (10.19 %); this profile was distinct from those of the closely related species. The major respiratory quinone of GI5T was Q-8. The main polar lipids were phosphatidylethanolamine and phosphatidylglycerol. Two putative alkane hydroxylase (alkB) genes were identified in GI5T. The G+C content of the genomic DNA of GI5T was determined to be 51.2 mol%. On the basis of the results of phenotypic, chemotaxonomic and phylogenetic studies, strain GI5T represents a novel species of a novel genus of the family Alcanivoracaceae, for which we propose the name Ketobacter alkanivorans gen. nov., sp. nov.; the type strain is GI5T (=KCTC 52659T=JCM 31835T).
- Subjects :
- DNA, Bacterial
0301 basic medicine
Ubiquinone
AlkB
Alcanivoraceae
Microbiology
03 medical and health sciences
RNA, Ribosomal, 16S
Alkanes
Republic of Korea
Seawater
Phospholipids
Phylogeny
Ecology, Evolution, Behavior and Systematics
Base Composition
Oxidase test
biology
Phylogenetic tree
Strain (chemistry)
Fatty Acids
Sequence Analysis, DNA
General Medicine
16S ribosomal RNA
biology.organism_classification
Bacterial Typing Techniques
genomic DNA
030104 developmental biology
biology.protein
Bacteria
Subjects
Details
- ISSN :
- 14665034 and 14665026
- Volume :
- 68
- Database :
- OpenAIRE
- Journal :
- International Journal of Systematic and Evolutionary Microbiology
- Accession number :
- edsair.doi.dedup.....14c9890dd899fbf0ad7c6074294fbcdc
- Full Text :
- https://doi.org/10.1099/ijsem.0.002823