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Complete genome sequence and comparative genome analysis of Alcanivorax sp. IO_7, a marine alkane-degrading bacterium isolated from hydrothermally-influenced deep seawater of southwest Indian ridge
- Source :
- Genomics. 113:884-891
- Publication Year :
- 2021
- Publisher :
- Elsevier BV, 2021.
-
Abstract
- Genome of Alcanivorax sp. IO_7, an alkane degrading deep-sea bacteria isolated from hydrothermally-influenced Southwest Indian Ridge was sequenced and analysed. Genomic data mining revealed gene clusters for degrading n-alkane and cycloalkanes, including biosurfactant production. The strain was shown to grow on hexadecane as its sole carbon source, supporting the findings of genomic analysis. Presence of cyclohexanone monooxygenase among genomic islands suggest that this strain may have used gene transfer to enhance its hydrocarbon degradation ability. Genes encoding for heavy metal resistance, multidrug resistance and multiple natural product biosynthesis crucial for survival in the hydrothermally influenced deep sea environment were detected. In our comparative genome analysis, it was evident that marine Alcanivorax strains contain a suite of enzymes for n-alkane and haloalkanoate degradation. Comparative genome and genomic synteny analysis provided insights into the physiological features and adaptation strategies of Alcanivorax sp. IO_7 in the deep-sea hydrothermal environment.
- Subjects :
- 0106 biological sciences
Comparative genomics
Genetics
Whole genome sequencing
0303 health sciences
Genomic Islands
biology
Ridge (biology)
Drug Resistance
Alcanivoraceae
biology.organism_classification
01 natural sciences
Genome
03 medical and health sciences
Metals, Heavy
Alkanes
Seawater
Alcanivorax
Gene
Genome, Bacterial
Bacteria
030304 developmental biology
010606 plant biology & botany
Synteny
Subjects
Details
- ISSN :
- 08887543
- Volume :
- 113
- Database :
- OpenAIRE
- Journal :
- Genomics
- Accession number :
- edsair.doi.dedup.....141f571c04af20a338c8bfd994f783e4
- Full Text :
- https://doi.org/10.1016/j.ygeno.2020.10.020