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ELIXIR-EXCELERATE D6.3: Report describing a set of tools, pipelines and search engine for interrogation of marine metagenomic data

Authors :
Mitchell, Alex
Scheremetjew, Maxim
De Moro, Gianluca
Fosso, Bruno
Santamaria, Monica
Pesole, Graziano
Raj, Shriya
Bongo, Lars Ailo
Willassen, Nils Peder
Finn, Robert D.
Publication Year :
2019
Publisher :
Zenodo, 2019.

Abstract

● Pipelines expanded to increase scope of analysis, tools updated and tailoring of analysis to meet the demands of the MarineMetagenomics community. ● Analysis pipelines described in the Common Workflow Language (CWL) to enable reproducibility, facilitate comparisons and enhance development agility. ● Benchmark datasets generated for evaluating amplicon analyses across a range of biomes and 6 different marine shotgun metagenomics datasets developed. ● Cloud deployment of pipelines to increase compute capacity. ● New data analysis outputs that will feed the databases developed as part of thiswork package. ● Examples generated for federating searches across resource programmaticinterfaces. ● Wide range of different training activities and material developed. ● Major interaction with Compute (WP4) and Interoperability (WP5) platforms insharing problems and driving solutions (e.g. AAI and CWL, respectively)

Details

Language :
English
Database :
OpenAIRE
Accession number :
edsair.doi.dedup.....12d7d451d0e74b0b3758dbef0e8c9065
Full Text :
https://doi.org/10.5281/zenodo.3228302