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GRIN database: A unified and manually curated repertoire of GRIN variants

Authors :
Angels García-Cazorla
Ana Santos-Gómez
Adrián García-Recio
Mireia Olivella
Xavier Altafaj
Natalia Juliá-Palacios
David Soto
Source :
Human Mutation. 42:8-18
Publication Year :
2020
Publisher :
Hindawi Limited, 2020.

Abstract

Glutamatergic neurotransmission is crucial for brain development, wiring neuronal function, and synaptic plasticity mechanisms. Recent genetic studies showed the existence of autosomal dominant de novo GRIN gene variants associated with GRIN-related disorders (GRDs), a rare pediatric neurological disorder caused by N-methyl- d-aspartate receptor (NMDAR) dysfunction. Notwithstanding, GRIN variants identification is exponentially growing and their clinical, genetic, and functional annotations remain highly fragmented, representing a bottleneck in GRD patient's stratification. To shorten the gap between GRIN variant identification and patient stratification, we present the GRIN database (GRINdb), a publicly available, nonredundant, updated, and curated database gathering all available genetic, functional, and clinical data from more than 4000 GRIN variants. The manually curated GRINdb outputs on a web server, allowing query and retrieval of reported GRIN variants, and thus representing a fast and reliable bioinformatics resource for molecular clinical advice. Furthermore, the comprehensive mapping of GRIN variants' genetic and clinical information along NMDAR structure revealed important differences in GRIN variants' pathogenicity and clinical phenotypes, shedding light on GRIN-specific fingerprints. Overall, the GRINdb and web server is a resource for molecular stratification of GRIN variants, delivering clinical and investigational insights into GRDs. GRINdb is accessible at http://lmc.uab.es/grindb.

Details

ISSN :
10981004 and 10597794
Volume :
42
Database :
OpenAIRE
Journal :
Human Mutation
Accession number :
edsair.doi.dedup.....12157ce47c9d3f9722a3e93c1dd1996b