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Imidazole-rich copper peptides as catalysts in xenobiotic degradation
- Source :
- PLoS ONE, PLoS ONE, Vol 15, Iss 11, p e0238147 (2020)
- Publication Year :
- 2020
-
Abstract
- Laccases, oxidative copper-enzymes found in fungi and bacteria were used as the basis in the design of nona- and tetrapeptides. Laccases are known to be excellent catalysts for the degradation of phenolic xenobiotic waste. However, since solvent extraction of laccases is environmentally-unfriendly and yields obtained are low, they are less preferred compared to synthetic catalysts. The histidine rich peptides were designed based on the active site of laccase extracted from Trametes versicolor through RCSB Protein Data Bank, LOMETS and PyMol software. The peptides were synthesized using Fmoc-solid phase peptide synthesis (SPPS) with 30-40% yield. These peptides were purified and characterized using LC-MS (purities >75%), FTIR and NMR spectroscopy. Synthesized copper(II)-peptides were crystallized and then analyzed spectroscopically. Their structures were elucidated using 1D and 2D NMR. Standards (o,m,p-cresol, 2,4-dichlorophenol) catalysed using laccase from Trametes versicolor (0.66 U/mg) were screened under different temperatures and stirring rate conditions. After optimizing the degradation of the standards with the best reaction conditions reported herein, medications with phenolic and aromatic structures such as ibuprofen, paracetamol (acetaminophen), salbutamol, erythromycin and insulin were screened using laccase (positive control), apo-peptides and copper-peptides. Their activities evaluated using GC-MS, were compared with those of peptide and copper-peptide catalysts. The tetrapeptide was found to have the higher degradation activity towards salbutamol (96.8%) compared with laccase at 42.8%. Ibuprofen (35.1%), salbutamol (52.9%) and erythromycin (49.7%) were reported to have the highest degradation activities using Cu-tetrapeptide as catalyst when compared with the other medications. Consequently, o-cresol (84%) was oxidized by Tp-Cu while the apo-peptides failed to oxidize the cresols. Copper(II)-peptides were observed to have higher catalytic activity compared to their parent peptides and the enzyme laccase for xenobiotic degradation.
- Subjects :
- Models, Molecular
Molecular Conformation
Peptide
Laccases
010501 environmental sciences
Spectrum analysis techniques
01 natural sciences
Biochemistry
chemistry.chemical_compound
Antibiotics
Catalytic Domain
Peptide synthesis
Medicine and Health Sciences
Amino Acids
Databases, Protein
chemistry.chemical_classification
Trametes
Multidisciplinary
biology
Catalysts
Organic Compounds
Antimicrobials
Sulfates
Physics
Imidazoles
Chemical Reactions
Drugs
Nuclear magnetic resonance spectroscopy
Enzymes
Erythromycin
Chemistry
Pharmaceutical Preparations
Physical Sciences
Medicine
Basic Amino Acids
Protons
Research Article
Science
Microbiology
Catalysis
Xenobiotics
Fungal Proteins
NMR spectroscopy
Microbial Control
Oxidation
Histidine
0105 earth and related environmental sciences
Trametes versicolor
Nuclear Physics
Nucleons
Laccase
Pharmacology
Tetrapeptide
010405 organic chemistry
Organic Chemistry
Chemical Compounds
Active site
Biology and Life Sciences
Proteins
biology.organism_classification
0104 chemical sciences
Research and analysis methods
chemistry
biology.protein
Enzymology
Salts
Peptides
Copper
Nuclear chemistry
Chromatography, Liquid
Subjects
Details
- ISSN :
- 19326203
- Volume :
- 15
- Issue :
- 11
- Database :
- OpenAIRE
- Journal :
- PloS one
- Accession number :
- edsair.doi.dedup.....1214af0f2a92ba06fc5a7ee59f467b8b