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Softness and non-spherical shape define the phase behavior and the structural properties of lysozyme in aqueous solutions

Authors :
Andriy Baumketner
Wei Cai
Dino Costa
Myroslav Holovko
Roman Melnyk
Carlo Caccamo
Source :
The Journal of chemical physics. 144(1)
Publication Year :
2016

Abstract

In this study, Boltzmann inversion is applied in conjunction with molecular dynamics simulations to derive inter-molecular potential for protein lysozyme in aqueous solution directly from experimental static structure factor. The potential has a soft repulsion at short distances and an attraction well at intermediate distances that give rise to the liquid-liquid phase separation. Moreover, Gibbs ensemble Monte Carlo simulations demonstrate that a non-spherical description of lysozyme is better suited to correctly reproduce the experimentally observed properties of such a phase separation. Our findings shed new light on the common problem in molecular and cell biology: “How to model proteins in their natural aqueous environments?”

Details

ISSN :
10897690
Volume :
144
Issue :
1
Database :
OpenAIRE
Journal :
The Journal of chemical physics
Accession number :
edsair.doi.dedup.....11cf07f589150435a988179aba8b156f