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Softness and non-spherical shape define the phase behavior and the structural properties of lysozyme in aqueous solutions
- Source :
- The Journal of chemical physics. 144(1)
- Publication Year :
- 2016
-
Abstract
- In this study, Boltzmann inversion is applied in conjunction with molecular dynamics simulations to derive inter-molecular potential for protein lysozyme in aqueous solution directly from experimental static structure factor. The potential has a soft repulsion at short distances and an attraction well at intermediate distances that give rise to the liquid-liquid phase separation. Moreover, Gibbs ensemble Monte Carlo simulations demonstrate that a non-spherical description of lysozyme is better suited to correctly reproduce the experimentally observed properties of such a phase separation. Our findings shed new light on the common problem in molecular and cell biology: “How to model proteins in their natural aqueous environments?”
- Subjects :
- Protein Conformation
Muramidase
Solutions
Water
Molecular Dynamics Simulation
Physics and Astronomy (all)
Physical and Theoretical Chemistry
Monte Carlo method
General Physics and Astronomy
02 engineering and technology
01 natural sciences
symbols.namesake
Molecular dynamics
Phase (matter)
0103 physical sciences
Statistical physics
Canonical ensemble
Aqueous solution
010304 chemical physics
Chemistry
Molecular biophysics
021001 nanoscience & nanotechnology
Condensed Matter::Soft Condensed Matter
Chemical physics
Boltzmann constant
symbols
0210 nano-technology
Structure factor
Subjects
Details
- ISSN :
- 10897690
- Volume :
- 144
- Issue :
- 1
- Database :
- OpenAIRE
- Journal :
- The Journal of chemical physics
- Accession number :
- edsair.doi.dedup.....11cf07f589150435a988179aba8b156f