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HiGlass: Web-based Visual Exploration and Analysis of Genome Interaction Maps
- Source :
- Genome Biology, Vol 19, Iss 1, Pp 1-12 (2018), BioMed Central, Genome Biology
- Publication Year :
- 2017
- Publisher :
- Cold Spring Harbor Laboratory, 2017.
-
Abstract
- We present HiGlass, an open source visualization tool built on web technologies that provides a rich interface for rapid, multiplex, and multiscale navigation of 2D genomic maps alongside 1D genomic tracks, allowing users to combine various data types, synchronize multiple visualization modalities, and share fully customizable views with others. We demonstrate its utility in exploring different experimental conditions, comparing the results of analyses, and creating interactive snapshots to share with collaborators and the broader public. HiGlass is accessible online at http://higlass.io and is also available as a containerized application that can be run on any platform.<br />National Institutes of Health (U.S.) (U01 CA200059)<br />National Institutes of Health (U.S.) (R00 HG007583)<br />National Institutes of Health (U.S.) (U54 HG007963)
- Subjects :
- 0301 basic medicine
lcsh:QH426-470
Computer science
Chromosome conformation
Interface (computing)
Biology
Genome
Data type
User-Computer Interface
03 medical and health sciences
0302 clinical medicine
Data visualization
Hi-C
Human–computer interaction
Web application
lcsh:QH301-705.5
030304 developmental biology
Internet
0303 health sciences
Modalities
business.industry
030302 biochemistry & molecular biology
Chromosome Mapping
Genomics
3. Good health
Visualization
lcsh:Genetics
030104 developmental biology
Open source
lcsh:Biology (General)
business
Software
030217 neurology & neurosurgery
Subjects
Details
- Database :
- OpenAIRE
- Journal :
- Genome Biology, Vol 19, Iss 1, Pp 1-12 (2018), BioMed Central, Genome Biology
- Accession number :
- edsair.doi.dedup.....0f9eedc23f90f094f57af35ff67d2922