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Approximate String Matching using a Bidirectional Index

Authors :
Kamil Salikhov
Dekel Tsur
Gregory Kucherov
Department of Computer Science [Beer-Sheva]
Ben-Gurion University of the Negev (BGU)
Laboratoire d'Informatique Gaspard-Monge (LIGM)
Centre National de la Recherche Scientifique (CNRS)-Fédération de Recherche Bézout-ESIEE Paris-École des Ponts ParisTech (ENPC)-Université Paris-Est Marne-la-Vallée (UPEM)
Lomonosov Moscow State University (MSU)
ABS4NGS
Alexander S. Kulikov
Sergei O. Kuznetsov
Pavel Pevzner
Université Paris-Est Marne-la-Vallée (UPEM)-École des Ponts ParisTech (ENPC)-ESIEE Paris-Fédération de Recherche Bézout-Centre National de la Recherche Scientifique (CNRS)
Department of Mathematical Logic and Theory of Algorithms
Source :
LNCS, CPM 2014, CPM 2014, Jun 2014, Moscow, Russia. pp.222-231, ⟨10.1007/978-3-319-07566-2_23⟩, Theoretical Computer Science, Theoretical Computer Science, Elsevier, 2016, 638, pp.145-158. ⟨10.1016/j.tcs.2015.10.043⟩, Combinatorial Pattern Matching ISBN: 9783319075655, CPM
Publication Year :
2013

Abstract

International audience; We study strategies of approximate pattern matching that exploit bidirectional text indexes, extending and generalizing ideas of [5]. We introduce a formalism, called search schemes, to specify search strate-gies of this type, then develop a probabilistic measure for the efficiency of a search scheme, prove several combinatorial results on efficient search schemes, and finally, provide experimental computations supporting the superiority of our strategies.

Details

Language :
English
ISBN :
978-3-319-07565-5
ISSN :
18792294 and 03043975
ISBNs :
9783319075655
Database :
OpenAIRE
Journal :
LNCS, CPM 2014, CPM 2014, Jun 2014, Moscow, Russia. pp.222-231, ⟨10.1007/978-3-319-07566-2_23⟩, Theoretical Computer Science, Theoretical Computer Science, Elsevier, 2016, 638, pp.145-158. ⟨10.1016/j.tcs.2015.10.043⟩, Combinatorial Pattern Matching ISBN: 9783319075655, CPM
Accession number :
edsair.doi.dedup.....0f7a391a0eaabe354f603f14fcda4e77
Full Text :
https://doi.org/10.1007/978-3-319-07566-2_23⟩