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Electronegativity Equalization Method: Parameterization and Validation for Large Sets of Organic, Organohalogene and Organometal Molecule
- Source :
- International Journal of Molecular Sciences; Volume 8; Issue 7; Pages: 572-582, International Journal of Molecular Sciences, Vol 8, Iss 7, Pp 572-582 (2007), International Journal of Molecular Sciences
- Publication Year :
- 2007
- Publisher :
- MDPI AG, 2007.
-
Abstract
- The Electronegativity Equalization Method (EEM) is a fast approach for charge calculation. A challenging part of the EEM is the parameterization, which is performed using ab initio charges obtained for a set of molecules. The goal of our work was to perform the EEM parameterization for selected sets of organic, organohalogen and organometal molecules. We have performed the most robust parameterization published so far. The EEM parameterization was based on 12 training sets selected from a database of predicted 3D structures (NCI DIS) and from a database of crystallographic structures (CSD). Each set contained from 2000 to 6000 molecules. We have shown that the number of molecules in the training set is very important for quality of the parameters. We have improved EEM parameters (STO-3G MPA charges) for elements that were already parameterized, specifically: C, O, N, H, S, F and Cl. The new parameters provide more accurate charges than those published previously. We have also developed new parameters for elements that were not parameterized yet, specifically for Br, I, Fe and Zn. We have also performed crossover validation of all obtained parameters using all training sets that included relevant elements and confirmed that calculated parameters provide accurate charges.
- Subjects :
- Work (thermodynamics)
Crossover
Organometals
Ab initio
Parameterized complexity
Parameterization
Nanotechnology
010402 general chemistry
01 natural sciences
Full Research Paper
Electronegativity Equalization Method
Catalysis
lcsh:Chemistry
Inorganic Chemistry
Set (abstract data type)
0103 physical sciences
Charge distribution
Organohalogenes
Molecule
Physical and Theoretical Chemistry
lcsh:QH301-705.5
Molecular Biology
Spectroscopy
010304 chemical physics
Chemistry
Organic Chemistry
Charge density
Charge (physics)
General Medicine
0104 chemical sciences
Computer Science Applications
lcsh:Biology (General)
lcsh:QD1-999
Biological system
Subjects
Details
- ISSN :
- 14220067
- Volume :
- 8
- Database :
- OpenAIRE
- Journal :
- International Journal of Molecular Sciences
- Accession number :
- edsair.doi.dedup.....0f4ff0448989a263a097b750d3e35289
- Full Text :
- https://doi.org/10.3390/i8070572