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A large-scale species level dated angiosperm phylogeny for evolutionary and ecological analyses
- Source :
- Biodiversity Data Journal, Biodiversity Data Journal, Pensoft, 2020, 8 (e39677), ⟨10.3897/BDJ.8.e39677⟩, Biodiversity Data Journal 8: e39677, Biodiversity Data Journal, 8:e39677. Pensoft Publishers, Biodiversity Data Journal, 2020, 8 (e39677), ⟨10.3897/BDJ.8.e39677⟩, Biodiversity Data Journal, 8, Biodiversity Data Journal, Vol 8, Iss, Pp 1-23 (2020)
- Publication Year :
- 2020
- Publisher :
- HAL CCSD, 2020.
-
Abstract
- Phylogenies are a central and indispensable tool for evolutionary and ecological research. Even though most angiosperm families are well investigated from a phylogenetic point of view, there are far less possibilities to carry out large-scale meta-analyses at order level or higher. Here, we reconstructed a large-scale dated phylogeny including nearly 1/8th of all angiosperm species, based on two plastid barcoding genes, matK (incl. trnK) and rbcL. Novel sequences were generated for several species, while the rest of the data were mined from GenBank. The resulting tree was dated using 56 angiosperm fossils as calibration points. The resulting megaphylogeny is one of the largest dated phylogenetic tree of angiosperms yet, consisting of 36,101 sampled species, representing 8,399 genera, 426 families and all orders. This novel framework will be useful for investigating different broad scale research questions in ecological and evolutionary biology.<br />info:eu-repo/semantics/published
- Subjects :
- 0106 biological sciences
FOSSIL EVIDENCE
Angiosperms
Evolution
Biodiversity & Conservation
Biology
phylogeny
[SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy
010603 evolutionary biology
01 natural sciences
WESTERN INTERIOR
03 medical and health sciences
GENUS
[SDV.EE.ECO]Life Sciences [q-bio]/Ecology, environment/Ecosystems
Species level
Phylogenetics
evolution
R PACKAGE
lcsh:QH301-705.5
FRUITS
Phylogeny
030304 developmental biology
NEW-JERSEY
0303 health sciences
Science & Technology
Phylogenetic tree
Ecology
EARLY EOCENE
NORTH-AMERICA
[SDV.BV.BOT]Life Sciences [q-bio]/Vegetal Biology/Botanics
lcsh:Biology (General)
Large-scale dating analyses
FOS: Biological sciences
GenBank
large-scale dating analyse
large-scale dating analyses
Biodiversity Conservation
SP-NOV
Research questions
DIVERSIFICATION
ecology
[SDE.BE]Environmental Sciences/Biodiversity and Ecology
Scale (map)
angiosperms
Biologie
Life Sciences & Biomedicine
Research Article
Subjects
Details
- Language :
- English
- ISSN :
- 13142828 and 13142836
- Database :
- OpenAIRE
- Journal :
- Biodiversity Data Journal, Biodiversity Data Journal, Pensoft, 2020, 8 (e39677), ⟨10.3897/BDJ.8.e39677⟩, Biodiversity Data Journal 8: e39677, Biodiversity Data Journal, 8:e39677. Pensoft Publishers, Biodiversity Data Journal, 2020, 8 (e39677), ⟨10.3897/BDJ.8.e39677⟩, Biodiversity Data Journal, 8, Biodiversity Data Journal, Vol 8, Iss, Pp 1-23 (2020)
- Accession number :
- edsair.doi.dedup.....0e5a181113c4f831111329b451b13f97