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Molecular surveillance of norovirus, 2005–16 : an epidemiological analysis of data collected from the NoroNet network
- Source :
- The Lancet Infectious Diseases, The Lancet Infectious Diseases, New York, NY : Elsevier Science ; The Lancet Pub. Group, 2001-, 2018, 18 (5), pp.545-553. ⟨10.1016/S1473-3099(18)30059-8⟩, The Lancet Infectious Diseases, 2018, 〈10.1016/S1473-3099(18)30059-8〉, Lancet Infectious Diseases, 18(5), 545-553. Lancet Publishing Group, Lancet Infectious Diseases, 18(5), 545-553. ELSEVIER SCI LTD
- Publication Year :
- 2018
- Publisher :
- HAL CCSD, 2018.
-
Abstract
- BACKGROUND: The development of a vaccine for norovirus requires a detailed understanding of global genetic diversity of noroviruses. We analysed their epidemiology and diversity using surveillance data from the NoroNet network.METHODS: We included genetic sequences of norovirus specimens obtained from outbreak investigations and sporadic gastroenteritis cases between 2005 and 2016 in Europe, Asia, Oceania, and Africa. We genotyped norovirus sequences and analysed sequences that overlapped at open reading frame (ORF) 1 and ORF2. Additionally, we assessed the sampling date and country of origin of the first reported sequence to assess when and where novel drift variants originated.FINDINGS: We analysed 16 635 norovirus sequences submitted between Jan 1, 2005, to Nov 17, 2016, of which 1372 (8·2%) sequences belonged to genotype GI, 15 256 (91·7%) to GII, and seven (INTERPRETATION: Continuous changes in the global norovirus genetic diversity highlight the need for sustained global norovirus surveillance, including assessment of possible immune escape and evolution by recombination, to provide a full overview of norovirus epidemiology for future vaccine policy decisions.FUNDING: European Union's Horizon 2020 grant COMPARE, ZonMw TOP grant, the Virgo Consortium funded by the Dutch Government, and the Hungarian Scientific Research Fund.
- Subjects :
- 0301 basic medicine
Databases, Factual
viruses
VARIANTS
medicine.disease_cause
Disease Outbreaks
EMERGENCE
fluids and secretions
[SDV.MHEP.MI]Life Sciences [q-bio]/Human health and pathology/Infectious diseases
Epidemiology
Genotype
TOOL
media_common
Caliciviridae Infections
Molecular Epidemiology
virus diseases
respiratory system
3. Good health
Gastroenteritis
[ SDV.MHEP.MI ] Life Sciences [q-bio]/Human health and pathology/Infectious diseases
Infectious Diseases
Geography
[SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology
RNA, Viral
[ SDV.MHEP.HEG ] Life Sciences [q-bio]/Human health and pathology/Hépatology and Gastroenterology
OUTBREAKS
medicine.medical_specialty
EUROPE
TRANSMISSION
VIRUSES
[ SDV.MP.VIR ] Life Sciences [q-bio]/Microbiology and Parasitology/Virology
03 medical and health sciences
SDG 3 - Good Health and Well-being
Genetic drift
Environmental health
medicine
media_common.cataloged_instance
Humans
European union
Retrospective Studies
Genetic diversity
Molecular epidemiology
Norovirus
Outbreak
Genetic Variation
[SDV.MHEP.HEG]Life Sciences [q-bio]/Human health and pathology/Hépatology and Gastroenterology
ADULTS
digestive system diseases
EVOLUTION
030104 developmental biology
3121 General medicine, internal medicine and other clinical medicine
human activities
Subjects
Details
- Language :
- English
- ISSN :
- 14733099 and 14744457
- Database :
- OpenAIRE
- Journal :
- The Lancet Infectious Diseases, The Lancet Infectious Diseases, New York, NY : Elsevier Science ; The Lancet Pub. Group, 2001-, 2018, 18 (5), pp.545-553. ⟨10.1016/S1473-3099(18)30059-8⟩, The Lancet Infectious Diseases, 2018, 〈10.1016/S1473-3099(18)30059-8〉, Lancet Infectious Diseases, 18(5), 545-553. Lancet Publishing Group, Lancet Infectious Diseases, 18(5), 545-553. ELSEVIER SCI LTD
- Accession number :
- edsair.doi.dedup.....0df5ef16b590191e1891bf6f13800b7f
- Full Text :
- https://doi.org/10.1016/S1473-3099(18)30059-8⟩