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Molecular surveillance of norovirus, 2005–16 : an epidemiological analysis of data collected from the NoroNet network

Authors :
Vito Martella
Mateja Poljšak-Prijatelj
Mia Brytting
Martin C.W. Chan
Alexander T. Podkolzin
Janko van Beek
Katia Ambert-Balay
Leena Maunula
Miao Jin
Georgina McAllister
Janet Mans
Reimar Johne
Joanne Hewitt
Nadine Botteldoorn
Gábor Reuter
Haider Al-Hello
Fiona Cloak
Harry Vennema
Lasse Dam Rasmussen
Gráinne Tuite
Miranda de Graaf
María Cabrerizo
Susana Guix
Hubert G. M. Niesters
Javier Buesa
Marion Koopmans
Nobuhiro Iritani
Sandra Niendorf
Ilaria Di Bartolo
Ingeborg Lederer
David J. Allen
Annelies Kroneman
Department of Viroscience [Rotterdam, The Netherlands]
Erasmus University Medical Center [Rotterdam] (Erasmus MC)
National Institute of Public Health and the Environment (NIPHE)
Department of Integrative Physiology
University of Colorado [Boulder]
Laboratoire de sérologie-virologie (CHU de Dijon)
Centre Hospitalier Universitaire de Dijon - Hôpital François Mitterrand (CHU Dijon)
Procédés Alimentaires et Microbiologiques [Dijon] (PAM)
Université Bourgogne Franche-Comté [COMUE] (UBFC)-Université de Bourgogne (UB)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement
Scientific Service of Foodborne Pathogens [Brussels]
Institute of Public Health [Brussels]
Microbial Typing Unit [Stockholm]
The Public Health Agency of Sweden
Departamento de Microbiología, Facultad de Medicina
Universitat de València (UV)
Enterovirus and Viral Gastroenteritis [Madrid]
Instituto de Salud Carlos III [Madrid] (ISC)
Department of Microbiology, the University of Hong Kong
The University of Hong Kong (HKU)
Health Protection Surveillance Centre
Health Protection Surveillance Centre (HPSC)
Department of Veterinary Public Health and Food Safety
Istituto Superiore di Sanita [Rome]
Enteric Virus Laboratory [Barcelona]
University of Barcelona
Norovirus Reference Laboratory [Porirua]
Institute of Environmental Science and Research (ESR)
Department of Microbiology [Osaka]
Osaka Institute of Public Health
National Institute for Viral Disease Control and Prevention
Department of Biological Safety
Bundesinstitut für Risikobewertung - Federal Institute for Risk Assessment (BfR)
Austrian Agency for Health and Food Safety (AGES)
Department of Medical Virology
University of Pretoria [South Africa]
Sanità e Benessere degli Animali
Università di Bari, Facoltà di Medicina Veterinaria
Department of Food Hygiene and Environmental Health [Helsinki]
Faculty of Veterinary Medicine [Helsinki]
University of Helsinki-University of Helsinki
Royal Infirmary of Edinburgh
National Institute for Health and Welfare [Helsinki]
Centre National de Référence des virus entériques [CHU de Dijon] (CNR virus entériques)
Department of Pathogen Molecular Biology [London, UK]
London School of Hygiene and Tropical Medicine (LSHTM)
National Institute for Health Research (NIHR)
European Union's Horizon 2020 grant COMPARE, ZonMw TOP grant, the Virgo Consortium funded by the Dutch Government, and the Hungarian Scientific Research Fund.
Erasmus University Medical Center [Rotterdam]
National Institute of Public Health and the Environment ( NIPHE )
University of Colorado Boulder [Boulder]
Centre Hospitalier Universitaire de Dijon - Hôpital François Mitterrand ( CHU Dijon )
Procédés Alimentaires et Microbiologiques [Dijon] ( PAM )
Université de Bourgogne ( UB ) -AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement-Université Bourgogne Franche-Comté ( UBFC )
Universitat de València ( UV )
Instituto de Salud Carlos III
The University of Hong Kong ( HKU )
Institute of Environmental Science and Research
Federal Institute for Risk Assessment
AGES, Austrian Agency for Health and Food Safety - Austrian Agency for Health and Food Safety , Autriche.
Austrian Agency for Health and Food Safety
Department of Food Hygiene and Environmental Health, Faculty of Veterinary Medicine
University of Helsinki
University of Edinburgh
Centre National de Référence des virus entériques [CHU de Dijon] ( CNR virus entériques )
Department of Pathogen Molecular Biology
London School of Hygiene and Tropical Medicine ( LSHTM )
Erasmus University Medical Centre Rotterdam [Rotterdam]
Virology
Leena Maunula / Principal Investigator
Food Hygiene and Environmental Health
Food and Environmental Virology Research Group
Source :
The Lancet Infectious Diseases, The Lancet Infectious Diseases, New York, NY : Elsevier Science ; The Lancet Pub. Group, 2001-, 2018, 18 (5), pp.545-553. ⟨10.1016/S1473-3099(18)30059-8⟩, The Lancet Infectious Diseases, 2018, 〈10.1016/S1473-3099(18)30059-8〉, Lancet Infectious Diseases, 18(5), 545-553. Lancet Publishing Group, Lancet Infectious Diseases, 18(5), 545-553. ELSEVIER SCI LTD
Publication Year :
2018
Publisher :
HAL CCSD, 2018.

Abstract

BACKGROUND: The development of a vaccine for norovirus requires a detailed understanding of global genetic diversity of noroviruses. We analysed their epidemiology and diversity using surveillance data from the NoroNet network.METHODS: We included genetic sequences of norovirus specimens obtained from outbreak investigations and sporadic gastroenteritis cases between 2005 and 2016 in Europe, Asia, Oceania, and Africa. We genotyped norovirus sequences and analysed sequences that overlapped at open reading frame (ORF) 1 and ORF2. Additionally, we assessed the sampling date and country of origin of the first reported sequence to assess when and where novel drift variants originated.FINDINGS: We analysed 16 635 norovirus sequences submitted between Jan 1, 2005, to Nov 17, 2016, of which 1372 (8·2%) sequences belonged to genotype GI, 15 256 (91·7%) to GII, and seven (INTERPRETATION: Continuous changes in the global norovirus genetic diversity highlight the need for sustained global norovirus surveillance, including assessment of possible immune escape and evolution by recombination, to provide a full overview of norovirus epidemiology for future vaccine policy decisions.FUNDING: European Union's Horizon 2020 grant COMPARE, ZonMw TOP grant, the Virgo Consortium funded by the Dutch Government, and the Hungarian Scientific Research Fund.

Details

Language :
English
ISSN :
14733099 and 14744457
Database :
OpenAIRE
Journal :
The Lancet Infectious Diseases, The Lancet Infectious Diseases, New York, NY : Elsevier Science ; The Lancet Pub. Group, 2001-, 2018, 18 (5), pp.545-553. ⟨10.1016/S1473-3099(18)30059-8⟩, The Lancet Infectious Diseases, 2018, 〈10.1016/S1473-3099(18)30059-8〉, Lancet Infectious Diseases, 18(5), 545-553. Lancet Publishing Group, Lancet Infectious Diseases, 18(5), 545-553. ELSEVIER SCI LTD
Accession number :
edsair.doi.dedup.....0df5ef16b590191e1891bf6f13800b7f
Full Text :
https://doi.org/10.1016/S1473-3099(18)30059-8⟩