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An Open Resource for Non-human Primate Imaging

Authors :
Jennifer Nacef
Kevin N. Laland
Wilbert Zarco
Charles E. Schroeder
Jamie Nagy
Julien Sein
P. Christiaan Klink
Kelvin Mok
Michael P. Milham
Stanislas Dehaene
Charles R.E. Wilson
Orlin S. Todorov
Erwin L. A. Blezer
Winrich A. Freiwald
Béchir Jarraya
Fadila Hadj-Bouziane
John H. Morrison
David A. Rudko
Zheng Wang
Essa Yacoub
Leslie G. Ungerleider
Brian E. Russ
Amir Shmuel
Emmanuel Procyk
Stefan Everling
Elinor L. Sullivan
Doris Y. Tsao
Noam Harel
Bassem Hiba
Thomas Brochier
Jakob Seidlitz
Sabine Kastner
Michael Ortiz Rios
Martine Meunier
Alexander Thiele
Carole Guedj
Paula L. Croxson
Sze Chai Kwok
Yong-di Zhou
Christopher I. Petkov
Ting Xu
Caspar M. Schwiedrzik
Frank Q. Ye
Fabien Balezeau
Aihua Chen
Ravi S. Menon
Adam Messinger
Mark G. Baxter
Matthew F. S. Rushworth
Sean Froudist-Walsh
Rogier B. Mars
Reza Rajimehr
Christienne G. Damatac
Bonhwang Koo
Lei Ai
Colline Poirier
David A. Leopold
Simon M. Reader
Daniel S. Margulies
Mark A. Pinsk
Benjamin Jung
Lazar Fleysher
Timothy D. Griffiths
Michael C. Schmid
Céline Amiez
Suliann Ben Hamed
Jerome Sallet
Pieter R. Roelfsema
Damian A. Fair
Patrik Lindenfors
Nathan S. Kline Institute for Psychiatric Research (NKI)
New York State Office of Mental Health
Child Mind Institute
Institut cellule souche et cerveau / Stem Cell and Brain Research Institute (SBRI)
Université Claude Bernard Lyon 1 (UCBL)
Université de Lyon-Université de Lyon-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
Newcastle University [Newcastle]
Icahn School of Medicine at Mount Sinai [New York] (MSSM)
University Medical Center [Utrecht]
Institut de Neurosciences de la Timone (INT)
Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS)
East China Normal University [Shangaï] (ECNU)
Radboud University [Nijmegen]
Neuroimagerie cognitive - Psychologie cognitive expérimentale (UNICOG-U992)
Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université Paris-Saclay
Collège de France - Chaire Psychologie cognitive expérimentale
Collège de France (CdF (institution))
The University of Western Ontario
Oregon Health and Science University [Portland] (OHSU)
Rockefeller University [New York]
New York University [New York] (NYU)
NYU System (NYU)
Centre de recherche en neurosciences de Lyon - Lyon Neuroscience Research Center (CRNL)
Université de Lyon-Université de Lyon-Université Jean Monnet - Saint-Étienne (UJM)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)
Institut des sciences cognitives Marc Jeannerod - Centre de neuroscience cognitive - UMR5229 (ISC-MJ)
Université de Lyon-Université de Lyon-Centre National de la Recherche Scientifique (CNRS)
University of Minnesota Medical School
University of Minnesota System
National Institute of Mental Health (NIMH)
Princeton Neuroscience Institute [Princeton]
Royal Netherlands Academy of Arts and Sciences (KNAW)
University of St Andrews [Scotland]
National Institute of Neurological Disorders and Stroke [Bethesda] (NINDS)
National Institutes of Health [Bethesda] (NIH)
Stockholm University
Wellcome Trust Centre for Integrative Neuroimaging (WIN - FMRIB)
University of Oxford
McConnell Brain Imaging Centre (MNI)
Montreal Neurological Institute and Hospital
McGill University = Université McGill [Montréal, Canada]-McGill University = Université McGill [Montréal, Canada]
University of California [Davis] (UC Davis)
University of California (UC)
Princeton University
McGovern Institute for Brain Research [Cambridge]
Massachusetts Institute of Technology (MIT)
Utrecht University [Utrecht]
McGill University = Université McGill [Montréal, Canada]
Netherlands Institute for Neuroscience
National Institute of Environmental Health Sciences [Durham] (NIEHS-NIH)
Oregon National Primate Research Center (ONPRC)
California Institute of Technology (CALTECH)
Tianjin University of Science and Technology (TUST)
Center for Magnetic Resonance Research [Minneapolis] (CMRR)
University of Minnesota System-University of Minnesota System
Johns Hopkins University (JHU)
Centre de Recherche en Éthique [UdeM - Montréal] (CREUM)
Université de Montréal (UdeM)
Max Planck Institute for Human Cognitive and Brain Sciences [Leipzig] (IMPNSC)
Max-Planck-Gesellschaft
Institut du Cerveau = Paris Brain Institute (ICM)
Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-CHU Pitié-Salpêtrière [AP-HP]
Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Sorbonne Université (SU)-Sorbonne Université (SU)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)
Columbia University College of Physicians and Surgeons
University of St Andrews. School of Biology
University of St Andrews. Centre for Biological Diversity
University of St Andrews. Scottish Oceans Institute
University of St Andrews. Institute of Behavioural and Neural Sciences
University of St Andrews. Centre for Social Learning & Cognitive Evolution
Netherlands Institute for Neuroscience (NIN)
Equipe Impact, Centre de Recherche en Neurosciences de Lyon, INSERM U1028, CNRS UMR5292
Academic Medical Center
Institut cellule souche et cerveau / Stem Cell and Brain Research Institute (U1208 Inserm - UCBL1 / SBRI - USC 1361 INRAE)
Radboud university [Nijmegen]
Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris Saclay (COmUE)-Institut National de la Santé et de la Recherche Médicale (INSERM)
Chaire Psychologie cognitive expérimentale
Centre de recherche en neurosciences de Lyon (CRNL)
Université de Lyon-Université de Lyon-Université Jean Monnet [Saint-Étienne] (UJM)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)
Institut des sciences cognitives Marc Jeannerod - Centre de neuroscience cognitive - UMR5229 (CNC)
University of Oxford [Oxford]
University of California
Institut du Cerveau et de la Moëlle Epinière = Brain and Spine Institute (ICM)
Institut National de la Santé et de la Recherche Médicale (INSERM)-CHU Pitié-Salpêtrière [AP-HP]
Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Sorbonne Université (SU)-Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Sorbonne Université (SU)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)
Seidlitz, Jakob [0000-0002-8164-7476]
Apollo - University of Cambridge Repository
Integrative Neurophysiology
Amsterdam Neuroscience - Cellular & Molecular Mechanisms
Univ Lyon, Université Lyon 1, Inserm, Stem Cell and Brain Research Institute U1208, Bron, France
Centre National de la Recherche Scientifique (CNRS)-Aix Marseille Université (AMU)
Neuroimagerie cognitive (UNICOG-U992)
Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université Paris-Sud - Paris 11 (UP11)
The Rockefeller University
McGill University-McGill University
McGill University
Centre de Recherche en Éthique de l'Université de Montréal (CREUM)
Université de Montréal [Montréal]
Institut National de la Santé et de la Recherche Médicale (INSERM)-CHU Pitié-Salpêtrière [APHP]-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)
Ben Hamed, Suliann
Source :
Neuron, Neuron, 2018, 100 (1), pp.61-74.e2. ⟨10.1016/j.neuron.2018.08.039⟩, Neuron, 100, 61-74.e2. Cell Press, Neuron, vol 100, iss 1, Neuron, Elsevier, 2018, 100 (1), pp.61-74.e2. ⟨10.1016/j.neuron.2018.08.039⟩, Neuron, 100(1), 61-74.e2. Cell Press, Neuron, 100, 61-74.e2, Neuron, 100, 1, pp. 61-74.e2, Milham, M P, Ai, L, Koo, B, Xu, T, Amiez, C, Balezeau, F, Baxter, M G, Blezer, E L A, Brochier, T, Chen, A, Croxson, P L, Damatac, C G, Dehaene, S, Everling, S, Fair, D A, Fleysher, L, Freiwald, W, Froudist-Walsh, S, Griffiths, T D, Guedj, C, Hadj-Bouziane, F, Ben Hamed, S, Harel, N, Hiba, B, Jarraya, B, Jung, B, Kastner, S, Klink, P C, Kwok, S C, Laland, K N, Leopold, D A, Lindenfors, P, Mars, R B, Menon, R S, Messinger, A, Meunier, M, Mok, K, Morrison, J H, Nacef, J, Nagy, J, Rios, M O, Petkov, C I, Pinsk, M, Poirier, C, Procyk, E, Rajimehr, R, Reader, S M, Roelfsema, P R, Rudko, D A, Rushworth, M F S, Russ, B E, Sallet, J, Schmid, M C, Schwiedrzik, C M, Seidlitz, J, Sein, J, Shmuel, A, Sullivan, E L, Ungerleider, L, Thiele, A, Todorov, O S, Tsao, D, Wang, Z, Wilson, C R E, Yacoub, E, Ye, F Q, Zarco, W, Zhou, Y D, Margulies, D S & Schroeder, C E 2018, ' An Open Resource for Non-human Primate Imaging ', Neuron, vol. 100, no. 1, pp. 61-74 . https://doi.org/10.1016/j.neuron.2018.08.039, Neuron, 100(1), 61-74. Cell Press, Brain and Mind Institute Researchers' Publications, Neuron, 100(1), 61. Cell Press
Publication Year :
2018
Publisher :
HAL CCSD, 2018.

Abstract

Summary Non-human primate neuroimaging is a rapidly growing area of research that promises to transform and scale translational and cross-species comparative neuroscience. Unfortunately, the technological and methodological advances of the past two decades have outpaced the accrual of data, which is particularly challenging given the relatively few centers that have the necessary facilities and capabilities. The PRIMatE Data Exchange (PRIME-DE) addresses this challenge by aggregating independently acquired non-human primate magnetic resonance imaging (MRI) datasets and openly sharing them via the International Neuroimaging Data-sharing Initiative (INDI). Here, we present the rationale, design, and procedures for the PRIME-DE consortium, as well as the initial release, consisting of 25 independent data collections aggregated across 22 sites (total = 217 non-human primates). We also outline the unique pitfalls and challenges that should be considered in the analysis of non-human primate MRI datasets, including providing automated quality assessment of the contributed datasets.<br />Highlights • Openly shared, large non-human primate neuroimaging data resource • Multiple imaging modalities contributed from investigators around the world • Quality assessments of the dataset • Discussed pitfalls and challenges in analyzing the non-human primate MRI data<br />The PRIMatE Data Exchange (PRIME-DE) consortium is an open science resource for the neuroimaging community aiming to facilitate efforts to map the non-human primate connectome. It aggregates and shares anatomical, functional, and diffusion MRI datasets from laboratories throughout the world.

Details

Language :
English
ISSN :
08966273 and 10974199
Database :
OpenAIRE
Journal :
Neuron, Neuron, 2018, 100 (1), pp.61-74.e2. ⟨10.1016/j.neuron.2018.08.039⟩, Neuron, 100, 61-74.e2. Cell Press, Neuron, vol 100, iss 1, Neuron, Elsevier, 2018, 100 (1), pp.61-74.e2. ⟨10.1016/j.neuron.2018.08.039⟩, Neuron, 100(1), 61-74.e2. Cell Press, Neuron, 100, 61-74.e2, Neuron, 100, 1, pp. 61-74.e2, Milham, M P, Ai, L, Koo, B, Xu, T, Amiez, C, Balezeau, F, Baxter, M G, Blezer, E L A, Brochier, T, Chen, A, Croxson, P L, Damatac, C G, Dehaene, S, Everling, S, Fair, D A, Fleysher, L, Freiwald, W, Froudist-Walsh, S, Griffiths, T D, Guedj, C, Hadj-Bouziane, F, Ben Hamed, S, Harel, N, Hiba, B, Jarraya, B, Jung, B, Kastner, S, Klink, P C, Kwok, S C, Laland, K N, Leopold, D A, Lindenfors, P, Mars, R B, Menon, R S, Messinger, A, Meunier, M, Mok, K, Morrison, J H, Nacef, J, Nagy, J, Rios, M O, Petkov, C I, Pinsk, M, Poirier, C, Procyk, E, Rajimehr, R, Reader, S M, Roelfsema, P R, Rudko, D A, Rushworth, M F S, Russ, B E, Sallet, J, Schmid, M C, Schwiedrzik, C M, Seidlitz, J, Sein, J, Shmuel, A, Sullivan, E L, Ungerleider, L, Thiele, A, Todorov, O S, Tsao, D, Wang, Z, Wilson, C R E, Yacoub, E, Ye, F Q, Zarco, W, Zhou, Y D, Margulies, D S & Schroeder, C E 2018, ' An Open Resource for Non-human Primate Imaging ', Neuron, vol. 100, no. 1, pp. 61-74 . https://doi.org/10.1016/j.neuron.2018.08.039, Neuron, 100(1), 61-74. Cell Press, Brain and Mind Institute Researchers' Publications, Neuron, 100(1), 61. Cell Press
Accession number :
edsair.doi.dedup.....0af0245adf676daa3ff28044472bc6e0
Full Text :
https://doi.org/10.1016/j.neuron.2018.08.039⟩