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Agrobacterium arsenijevicii sp. nov., isolated from crown gall tumors on raspberry and cherry plum
- Source :
- Systematic and Applied Microbiology
- Publication Year :
- 2015
- Publisher :
- Elsevier BV, 2015.
-
Abstract
- Two plant-tumorigenic strains KFB 330(T) and KFB 335 isolated from galls on raspberry (Rubus idaeus) in Serbia, and a non-pathogenic strain AL51.1 recovered from a cherry plum (Prunus cerasifera) tumor in Poland, were genotypically and phenotypically characterized. Phylogenetic reconstruction based on 16S rDNA placed them within the genus Agrobacterium, with A. nepotum as their closest relative. Multilocus sequence analysis (MLSA) based on the partial sequences of atpD, glnA, gyrB, recA and rpoB housekeeping genes suggested that these three strains represent a new Agrobacterium species, that clustered with type strains of A. nepotum, A. radiobacter, "A. fabrum" and A. pusense. This was further supported by average nucleotide identity values (
- Subjects :
- MLSA
DNA, Bacterial
Sequence analysis
Agrobacterium
Molecular Sequence Data
DNA, Ribosomal
Applied Microbiology and Biotechnology
Microbiology
Prunus cerasifera
Cytosol
16S rDNA
Plant Tumors
RNA, Ribosomal, 16S
Botany
Cluster Analysis
Gall
Phylogeny
Ecology, Evolution, Behavior and Systematics
Taxonomy
Genes, Essential
biology
Fatty Acids
Prunus domestica
Sequence Analysis, DNA
16S ribosomal RNA
biology.organism_classification
rpoB
Bacterial Typing Techniques
Housekeeping gene
Molecular Typing
Crown gall
ANI
Poland
Rubus
Serbia
Subjects
Details
- ISSN :
- 07232020
- Volume :
- 38
- Database :
- OpenAIRE
- Journal :
- Systematic and Applied Microbiology
- Accession number :
- edsair.doi.dedup.....09a3ad2284f372c98ea4b366045dece6