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Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data
- Source :
- Database, Database: The Journal of Biological Databases and Curation, PubMed Central
- Publication Year :
- 2018
- Publisher :
- Oxford University Press (OUP), 2018.
-
Abstract
- The Protein Data Bank (PDB) is the single global repository for experimentally determined 3D structures of biological macromolecules and their complexes with ligands. The worldwide PDB (wwPDB) is the international collaboration that manages the PDB archive according to the FAIR principles: Findability, Accessibility, Interoperability and Reusability. The wwPDB recently developed OneDep, a unified tool for deposition, validation and biocuration of structures of biological macromolecules. All data deposited to the PDB undergo critical review by wwPDB Biocurators. This article outlines the importance of biocuration for structural biology data deposited to the PDB and describes wwPDB biocuration processes and the role of expert Biocurators in sustaining a high-quality archive. Structural data submitted to the PDB are examined for self-consistency, standardized using controlled vocabularies, cross-referenced with other biological data resources and validated for scientific/technical accuracy. We illustrate how biocuration is integral to PDB data archiving, as it facilitates accurate, consistent and comprehensive representation of biological structure data, allowing efficient and effective usage by research scientists, educators, students and the curious public worldwide. Database URL: https://www.wwpdb.org/
- Subjects :
- 0301 basic medicine
Vocabulary
Data curation
Protein Conformation
Extramural
Computer science
media_common.quotation_subject
MEDLINE
computer.file_format
Protein Data Bank
Data science
General Biochemistry, Genetics and Molecular Biology
03 medical and health sciences
030104 developmental biology
Vocabulary, Controlled
Structural biology
Original Article
Quality (business)
Databases, Protein
General Agricultural and Biological Sciences
computer
Data Curation
Information Systems
media_common
Subjects
Details
- ISSN :
- 17580463
- Volume :
- 2018
- Database :
- OpenAIRE
- Journal :
- Database
- Accession number :
- edsair.doi.dedup.....0971262380065fa844429033dae13941