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Development of nuclear and plastid SNP markers for genetic studies of Dipteryx tree species in Amazonia
- Source :
- Conservation Genetics Resources, Conservation Genetics Resources, Springer, 2019, 11 (37), pp.1-4. ⟨10.1007/s12686-019-01081-3⟩, Web of Science, Repositório Institucional da UNESP, Universidade Estadual Paulista (UNESP), instacron:UNESP
- Publication Year :
- 2019
- Publisher :
- HAL CCSD, 2019.
-
Abstract
- Made available in DSpace on 2019-10-04T12:40:45Z (GMT). No. of bitstreams: 0 Previous issue date: 2019-09-01 German Federal Ministry of Food and Agriculture (BMEL) Programa Nacional de Innovacion para la Competitividad y Productividad Conseil Regional d'Aquitaine European Union, FEDER We developed nuclear and plastid single nucleotide polymorphism (SNP) and insertion/deletion (INDEL) markers for Dipteryx species using a combination of restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing. Of the total 315 loci genotyped using a MassARRAY platform, 292 loci were variable and polymorphic among the 73 sampled individuals from French Guiana, Brasil, Peru, and Bolivia. A final set of 56 nuclear SNPs, 26 chloroplast SNPs, 2 chloroplast INDELs, and 32 mitochondrial SNPs identifying significant population structure was developed. This set of loci will be useful for studies on population genetics of Dipteryx species in Amazonia. IIAP, Ave Jose A Quinones Km 2-5, Iquitos, Peru Thunen Inst Forest Genet, Sieker Landstr 2, D-22927 Grosshansdorf, Germany Inst Florestal Sao Paulo, CP 1322, BR-01059970 Sao Paulo, SP, Brazil Univ Estadual Paulista, Fac Engn Ilha Solteira, Dept Fitotecnia, Ilha Solteira, SP, Brazil Univ Autonoma Gabriel Rene Moreno, Fac Ciencias Agr, Lab Dendrocronol, Carrera Ingn Forestal, Km 9 Carretera Norte, El Vallecito, Santa Cruz, Bolivia Univ Guyane, Univ Antilles, CNRS, INRA,UMR0745 EcoFoG,AgroParisTech,Cirad, Campus Agron,Ave France,BP97387, Kourou, France INRA, Plateforme Genome Transcriptome Bordeaux, Site Pierroton Batiment Artiga,69 Route Arcachon, F-33610 Cestas, France Univ Estadual Paulista, Fac Engn Ilha Solteira, Dept Fitotecnia, Ilha Solteira, SP, Brazil Programa Nacional de Innovacion para la Competitividad y Productividad: 381-PNICP-PIAP-2014 Conseil Regional d'Aquitaine: 20030304002FA Conseil Regional d'Aquitaine: 20040305003FA European Union, FEDER: 2003227 European Union, FEDER: ANR-10-EQPX-16-01 European Union, FEDER: ANR-10-LABX-25-01
- Subjects :
- 0106 biological sciences
0301 basic medicine
MassaARRAY
MassARRAY
[SDV]Life Sciences [q-bio]
Population genetics
SNP
Single-nucleotide polymorphism
010603 evolutionary biology
01 natural sciences
DNA sequencing
03 medical and health sciences
Genetics
Timber species
Plastid
Indel
Ecology, Evolution, Behavior and Systematics
2. Zero hunger
biology
Amazon rainforest
food and beverages
15. Life on land
biology.organism_classification
Dipteryx
030104 developmental biology
cumaru
timber species
Cumaru
Subjects
Details
- Language :
- English
- ISSN :
- 18777252 and 18777260
- Database :
- OpenAIRE
- Journal :
- Conservation Genetics Resources, Conservation Genetics Resources, Springer, 2019, 11 (37), pp.1-4. ⟨10.1007/s12686-019-01081-3⟩, Web of Science, Repositório Institucional da UNESP, Universidade Estadual Paulista (UNESP), instacron:UNESP
- Accession number :
- edsair.doi.dedup.....0760975feef3067cb12a485a31b3b3ba