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Age-dependent impact of the major common genetic risk factor for COVID-19 on severity and mortality

Authors :
Nakanishi, Tomoko
Pigazzini, Sara
Degenhardt, Frauke
Cordioli, Mattia
Butler-Laporte, Guillaume
Maya-Miles, Douglas
Nafria Jimenez, Beatriz
Bouysran, Youssef
Niemi, Mari
Palom, Adriana
Ellinghaus, David
Khan, Atlas
Martínez-Bueno, Manuel
Rolker, Selina
Amitano, Sara
Roade, Luisa
FinnGen
The COVID-19 Host Genetics Initiative
Fava, Francesca
Spinner, Christoph D.
Prati, Daniele
Bernardo, David
García, Federico
Darcis, Gilles
Fernández-Cadenas, Israel
Holter, Jan Cato
Banales, Jesús M.
Frithiof, Robert
Kiryluk, Krzysztof
Duga, Stefano
Asselta, Rosanna
Pereira, Alexandre
Romero-Gómez, Manuel
Bujanda, Luis
Hov, Johannes R.
Migeotte, Isabelle
Renieri, Alessandra
Planas, Anna M.
Ludwig, Kerstin
Buti, María
Rahmouni, Souad
Alarcón-Riquelme, Marta E.
Schulte, Eva C.
Franke, Andre
Karlsen, Tom H.
Valenti, Luca
Zeberg, Hugo
Richards, Brent
Ganna, Andrea
NordForsk
Academy of Finland
Canadian Institutes of Health Research
Lady Davis Institute
Canada Foundation for Innovation
Cancer Research UK
National Institutes of Health (US)
Genome Canada
Japan Society for the Promotion of Science
European Commission
Medical Research Council (UK)
National Institute for Health Research (UK)
Wellcome Trust
German Research Foundation
Federal Ministry of Education and Research (Germany)
Instituto de Salud Carlos III
Junta de Andalucía
Columbia University
Università degli Studi di Siena
Ministero della Salute
Consejo Superior de Investigaciones Científicas (España)
Swedish Research Council
Technical University of Munich
University of Helsinki
Nakanishi, Tomoko [0000-0001-9510-5646]
Pigazzini, Sara [0000-0002-0641-9393]
Cordioli, Mattia [0000-0002-4872-0520]
Butler-Laporte, Guillaume [0000-0001-5388-0396]
Maya-Miles, Douglas [0000-0002-0669-6526]
Nafria Jimenez, Beatriz [0000-0002-4698-5680]
Bouysran, Youssef [0000-0003-1368-6550]
Niemi, Mari [0000-0003-0696-6175]
Palom, Adriana [0000-0002-0130-1302]
Ellinghaus, David [0000-0002-4332-6110]
Khan, Atlas [0000-0002-6651-2725]
Martínez-Bueno, Manuel [0000-0002-4333-4487]
Roade, Luisa [0000-0002-8160-9613]
Fava, Francesca [0000-0002-4363-2353]
Spinner, Christoph D. [0000-0002-3875-5367]
Prati, Daniele [0000-0002-2281-7498]
Bernardo, David [0000-0002-2843-6696]
Darcis, Gilles [0000-0001-8192-1351]
Fernández-Cadenas, Israel [0000-0003-4821-2363]
Holter, Jan Cato [0000-0003-1618-5022]
Frithiof, Robert [0000-0003-2278-7951]
Kiryluk, Krzysztof [0000-0002-5047-6715]
Duga, Stefano [0000-0003-3457-1410]
Asselta, Rosanna [0000-0001-5351-0619]
Pereira, Alexandre [0000-0002-7782-5540]
Romero-Gómez, Manuel [0000-0001-8494-8947]
Hov, Johannes R. [0000-0002-5900-8096]
Migeotte, Isabelle [0000-0002-8972-8211]
Renieri, Alessandra [0000-0002-0846-9220]
Planas, Anna M. [0000-0002-6147-1880]
Ludwig, Kerstin [0000-0002-8541-2519]
Buti, María [0000-0002-0732-3078]
Rahmouni, Souad [0000-0003-0956-0242]
Alarcón-Riquelme, M. E. [0000-0002-7632-4154]
Schulte, Eva C. [0000-0003-3105-5672]
Karlsen, Tom H. [0000-0002-8289-9931]
Valenti, Luca [0000-0001-8909-0345]
Zeberg, Hugo [0000-0001-7118-1249]
Richards, Brent [0000-0002-3746-9086]
Ganna, Andrea [0000-0002-8147-240X]
Junta de Castilla y León
Fundació Glòria Soler
Swedish Kidney Foundation
Research Council of Norway
Nakanishi, Tomoko
Pigazzini, Sara
Cordioli, Mattia
Butler-Laporte, Guillaume
Maya-Miles, Douglas
Nafria Jimenez, Beatriz
Bouysran, Youssef
Niemi, Mari
Palom, Adriana
Ellinghaus, David
Khan, Atlas
Martínez-Bueno, Manuel
Roade, Luisa
Fava, Francesca
Spinner, Christoph D.
Prati, Daniele
Bernardo, David
Darcis, Gilles
Fernández-Cadenas, Israel
Holter, Jan Cato
Frithiof, Robert
Kiryluk, Krzysztof
Duga, Stefano
Asselta, Rosanna
Pereira, Alexandre
Romero-Gómez, Manuel
Hov, Johannes R.
Migeotte, Isabelle
Renieri, Alessandra
Planas, Anna M.
Ludwig, Kerstin
Buti, María
Rahmouni, Souad
Alarcón-Riquelme, M. E.
Schulte, Eva C.
Karlsen, Tom H.
Valenti, Luca
Zeberg, Hugo
Richards, Brent
Ganna, Andrea
Nakanishi, T.
Pigazzini, S.
Degenhardt, F.
Cordioli, M.
Butler-Laporte, G.
Maya-Miles, D.
Bujanda, L.
Bouysran, Y.
Niemi, M. E. K.
Palom, A.
Ellinghaus, D.
Khan, A.
Martinez-Bueno, M.
Rolker, S.
Amitrano, S.
Tato, L. R.
Fava, F.
Gen, F.
Spinner, C. D.
Prati, D.
Bernardo, D.
Garcia, F.
Darcis, G.
Fernandez-Cadenas, I.
Holter, J. C.
Banales, J. M.
Frithiof, R.
Kiryluk, K.
Duga, S.
Asselta, R.
Pereira, A. C.
Romero-Gomez, M.
Nafria-Jimenez, B.
Hov, J. R.
Migeotte, I.
Renieri, A.
Planas, A. M.
Ludwig, K. U.
Buti, M.
Rahmouni, S.
Alarcon-Riquelme, M. E.
Schulte, E. C.
Franke, A.
Karlsen, T. H.
Valenti, L.
Zeberg, H.
Richards, J. B.
Ganna, A.
Source :
Digital.CSIC. Repositorio Institucional del CSIC, instname, J Clin Invest, JOURNAL OF CLINICAL INVESTIGATION, r-IIB SANT PAU. Repositorio Institucional de Producción Científica del Instituto de Investigación Biomédica Sant Pau, Nakanishi, T, Pigazzini, S, Degenhardt, F, Cordioli, M, Butler-Laporte, G, Maya-Miles, D, Bujanda, L, Bouysran, Y, Niemi, M E, Palom, A, Ellinghaus, D, Khan, A, Martínez-Bueno, M, Rolker, S, Amitrano, S, Roade Tato, L, Fava, F, Spinner, C D, Prati, D, Bernardo, D, Garcia, F, Darcis, G, Fernández-Cadenas, I, Holter, J C, Banales, J M, Frithiof, R, Kiryluk, K, Duga, S, Asselta, R, Pereira, A C, Romero-Gómez, M, Nafría-Jiménez, B, Hov, J R, Migeotte, I, Renieri, A, Planas, A M, Ludwig, K U, Buti, M, Rahmouni, S, Alarcón-Riquelme, M E, Schulte, E C, Franke, A, Karlsen, T H, Valenti, L, Zeberg, H, Richards, J B, Ganna, A & FinnGen 2021, ' Age-dependent impact of the major common genetic risk factor for COVID-19 on severity and mortality ', Journal of Clinical Investigation, vol. 131, no. 23, e152386 . https://doi.org/10.1172/JCI152386, Digibug. Repositorio Institucional de la Universidad de Granada, J. Clin. Invest. 131:e152386 (2021), medRxiv, article-version (status) pre, article-version (number) 1, medRxiv :the preprint server for health sciences, The Journal of Clinical Investigation, UVaDOC. Repositorio Documental de la Universidad de Valladolid, Dipòsit Digital de Documents de la UAB, Universitat Autònoma de Barcelona, The Journal of clinical investigation
Publication Year :
2021
Publisher :
MedRxiv, 2021.

Abstract

AG has received support by NordForsk Nordic Trial Alliance (NTA) grant, by Academy of Finland Fellow grant N. 323116 and the Academy of Finland for PREDICT consortium N. 340541. The Richards research group is supported by the Canadian Institutes of Health Research (CIHR) (365825 and 409511), the Lady Davis Institute of the Jewish General Hospital, the Canadian Foundation for Innovation (CFI), the NIH Foundation, Cancer Research UK, Genome Québec, the Public Health Agency of Canada, the McGill Interdisciplinary Initiative in Infection and Immunity and the Fonds de Recherche Québec Santé (FRQS). TN is supported by a research fellowship of the Japan Society for the Promotion of Science for Young Scientists. GBL is supported by a CIHR scholarship and a joint FRQS and Québec Ministry of Health and Social Services scholarship. JBR is supported by an FRQS Clinical Research Scholarship. Support from Calcul Québec and Compute Canada is acknowledged. TwinsUK is funded by the Welcome Trust, the Medical Research Council, the European Union, the National Institute for Health Research-funded BioResource and the Clinical Research Facility and Biomedical Research Centre based at Guy’s and St. Thomas’ NHS Foundation Trust in partnership with King’s College London. The Biobanque Québec COVID19 is funded by FRQS, Genome Québec and the Public Health Agency of Canada, the McGill Interdisciplinary Initiative in Infection and Immunity and the Fonds de Recherche Québec Santé. These funding agencies had no role in the design, implementation or interpretation of this study. The COVID19-Host(a)ge study received infrastructure support from the DFG Cluster of Excellence 2167 “Precision Medicine in Chronic Inflammation (PMI)” (DFG Grant: “EXC2167”). The COVID19-Host(a)ge study was supported by the German Federal Ministry of Education and Research (BMBF) within the framework of the Computational Life Sciences funding concept (CompLS grant 031L0165). Genotyping in COVID19-Host(a)ge was supported by a philantropic donation from Stein Erik Hagen. The COVID GWAs, Premed COVID-19 study (COVID19-Host(a)ge_3) was supported by "Grupo de Trabajo en Medicina Personalizada contra el COVID-19 de Andalucia"and also by the Instituto de Salud Carlos III (CIBERehd and CIBERER). Funding comes from COVID-19-GWAS, COVID-PREMED initiatives. Both of them are supported by "Consejeria de Salud y Familias" of the Andalusian Government. DMM is currently funded by the the Andalussian government (Proyectos Estratégicos-Fondos Feder PE-0451-2018). The Columbia University Biobank was supported by Columbia University and the National Center for Advancing Translational Sciences, NIH, through Grant Number UL1TR001873. The content is solely the responsibility of the authors and does not necessarily represent the official views of the NIH or Columbia University. The SPGRX study was supported by the Consejería de Economía, Conocimiento, Empresas y Universidad #CV20-10150. The GEN-COVID study was funded by: the MIUR grant “Dipartimenti di Eccellenza 2018-2020” to the Department of Medical Biotechnologies University of Siena, Italy; the “Intesa San Paolo 2020 charity fund” dedicated to the project NB/2020/0119; and philanthropic donations to the Department of Medical Biotechnologies, University of Siena for the COVID-19 host genetics research project (D.L n.18 of March 17, 2020). Part of this research project is also funded by Tuscany Region “Bando Ricerca COVID-19 Toscana” grant to the Azienda Ospedaliero Universitaria Senese (CUP I49C20000280002). Authors are grateful to: the CINECA consortium for providing computational resources; the Network for Italian Genomes (NIG) (http://www.nig.cineca.it) for its support; the COVID-19 Host Genetics Initiative (https://www.covid19hg.org/); the Genetic Biobank of Siena, member of BBMRI-IT, Telethon Network of Genetic Biobanks (project no. GTB18001), EuroBioBank, and RD-Connect, for managing specimens. Genetics against coronavirus (GENIUS), Humanitas University (COVID19-Host(a)ge_4) was supported by Ricerca Corrente (Italian Ministry of Health), intramural funding (Fondazione Humanitas per la Ricerca). The generous contribution of Banca Intesa San Paolo and of the Dolce&Gabbana Fashion Firm is gratefully acknowledged. Data acquisition and sample processing was supported by COVID-19 Biobank, Fondazione IRCCS Cà Granda Milano; LV group was supported by MyFirst Grant AIRC n.16888, Ricerca Finalizzata Ministero della Salute RF-2016-02364358, Ricerca corrente Fondazione IRCCS Ca’ Granda Ospedale Maggiore Policlinico, the European Union (EU) Programme Horizon 2020 (under grant agreement No. 777377) for the project LITMUS- “Liver Investigation: Testing Marker Utility in Steatohepatitis”, Programme “Photonics” under grant agreement “101016726” for the project “REVEAL: Neuronal microscopy for cell behavioural examination and manipulation”, Fondazione Patrimonio Ca’ Granda “Liver Bible” PR-0361. DP was supported by Ricerca corrente Fondazione IRCCS Ca’ Granda Ospedale Maggiore Policlinico, CV PREVITAL “Strategie di prevenzione primaria nella popolazione Italiana” Ministero della Salute, and Associazione Italiana per la Prevenzione dell’Epatite Virale (COPEV). Genetic modifiers for COVID-19 related illness (BeLCovid_1) was supported by the "Fonds Erasme". The Host genetics and immune response in SARS-Cov-2 infection (BelCovid_2) study was supported by grants from Fondation Léon Fredericq and from Fonds de la Recherche Scientifique (FNRS). The INMUNGEN-CoV2 study was funded by the Consejo Superior de Investigaciones Científicas. KUL is supported by the German Research Foundation (LU 1944/3-1) SweCovid is funded by the SciLifeLab/KAW national COVID-19 research program project grant to Michael Hultström (KAW 2020.0182) and the Swedish Research Council to Robert Frithiof (2014-02569 and 2014-07606). HZ is supported by Jeansson Stiftelser, Magnus Bergvalls Stiftelse. The COMRI cohort is funded by Technical University of Munich, Munich, Germany. Genotyping for the COMRI cohort was performed and funded by the Genotyping Laboratory of Institute for Molecular Medicine Finland FIMM Technology Centre, University of Helsinki, Helsinki, Finland. These funding agencies had no role in the design, implementation or interpretation of this study.<br />Background: There is considerable variability in COVID-19 outcomes amongst younger adults—and some of this variation may be due to genetic predisposition. We characterized the clinical implications of the major genetic risk factor for COVID-19 severity, and its age-dependent effect, using individual-level data in a large international multi-centre consortium. Method: The major common COVID-19 genetic risk factor is a chromosome 3 locus, tagged by the marker rs10490770. We combined individual level data for 13,424 COVID-19 positive patients (N=6,689 hospitalized) from 17 cohorts in nine countries to assess the association of this genetic marker with mortality, COVID-19-related complications and laboratory values. We next examined if the magnitude of these associations varied by age and were independent from known clinical COVID-19 risk factors. Findings: We found that rs10490770 risk allele carriers experienced an increased risk of all-cause mortality (hazard ratio [HR] 1·4, 95% confidence interval [CI] 1·2–1·6) and COVID-19 related mortality (HR 1·5, 95%CI 1·3–1·8). Risk allele carriers had increased odds of several COVID-19 complications: severe respiratory failure (odds ratio [OR] 2·0, 95%CI 1·6-2·6), venous thromboembolism (OR 1·7, 95%CI 1·2-2·4), and hepatic injury (OR 1·6, 95%CI 1·2-2·0). Risk allele carriers ≤ 60 years had higher odds of death or severe respiratory failure (OR 2·6, 95%CI 1·8-3·9) compared to those > 60 years OR 1·5 (95%CI 1·3-1·9, interaction p-value=0·04). Amongst individuals ≤ 60 years who died or experienced severe respiratory COVID-19 outcome, we found that 31·8% (95%CI 27·6-36·2) were risk variant carriers, compared to 13·9% (95%CI 12·6-15·2%) of those not experiencing these outcomes. Prediction of death or severe respiratory failure among those ≤ 60 years improved when including the risk allele (AUC 0·82 vs 0·84, p=0·016) and the prediction ability of rs10490770 risk allele was similar to, or better than, most established clinical risk factors. Interpretation: The major common COVID-19 risk locus on chromosome 3 is associated with increased risks of morbidity and mortality—and these are more pronounced amongst individuals ≤ 60 years. The effect on COVID-19 severity was similar to, or larger than most established risk factors, suggesting potential implications for clinical risk management.<br />Academy of Finland Fellow grant N. 323116<br />Academy of Finland for PREDICT consortium N. 340541.<br />Canadian Institutes of Health Research (CIHR) (365825 and 409511)<br />Lady Davis Institute of the Jewish General Hospital<br />Canadian Foundation for Innovation (CFI)<br />NIH Foundation<br />Cancer Research UK<br />Genome Québec<br />Public Health Agency of Canada<br />McGill Interdisciplinary Initiative in Infection and Immunity and the Fonds de Recherche Québec Santé (FRQS)<br />Japan Society for the Promotion of Science for Young Scientists<br />CIHR scholarship and a joint FRQS and Québec Ministry of Health and Social Services scholarship<br />FRQS Clinical Research Scholarship<br />Calcul Québec<br />Compute Canada<br />Welcome Trust<br />Medical Research Counc<br />European Union<br />National Institute for Health Research-funded BioResource<br />Clinical Research Facility and Biomedical Research Centre based at Guy’s and St. Thomas’ NHS Foundation Trust<br />King’s College London<br />McGill Interdisciplinary Initiative in Infection and Immunity<br />Fonds de Recherche Québec Santé<br />(DFG Grant: “EXC2167”)<br />(CompLS grant 031L0165)<br />Stein Erik Hagen<br />"Grupo de Trabajo en Medicina Personalizada contra el COVID-19 de Andalucia"<br />Instituto de Salud Carlos III (CIBERehd and CIBERER)<br />COVID-19-GWAS<br />COVID-PREMED initiatives<br />"Consejeria de Salud y Familias" of the Andalusian Government<br />Andalusian government (Proyectos Estratégicos-Fondos Feder PE-0451-2018)<br />Columbia University<br />National Center for Advancing Translational Sciences<br />NIH Grant Number UL1TR001873<br />Consejería de Economía, Conocimiento, Empresas y Universidad #CV20-10150<br />MIUR grant “Dipartimenti di Eccellenza 2018-2020”<br />“Intesa San Paolo 2020 charity fund” dedicated to the project NB/2020/0119<br />Tuscany Region “Bando Ricerca COVID-19 Toscana”<br />CINECA consortium<br />Network for Italian Genomes (NIG)<br />COVID-19 Host Genetics Initiative<br />Genetic Biobank of Siena<br />EuroBioBank<br />RD-Connect<br />Ricerca Corrente (Italian Ministry of Health)<br />Fondazione Humanitas per la Ricerca<br />Banca Intesa San Paolo<br />Dolce&Gabbana Fashion Firm<br />COVID-19 Biobank<br />Fondazione IRCCS Cà Granda Milano<br />MyFirst Grant AIRC n.16888<br />Ricerca Finalizzata Ministero della Salute RF-2016-02364358<br />Ricerca corrente Fondazione IRCCS Ca’ Granda Ospedale Maggiore Policlinico<br />European Union (EU) Programme Horizon 2020 (under grant agreement No. 777377)<br />“Photonics” “101016726”<br />Fondazione Patrimonio Ca’ Granda “Liver Bible” PR-0361<br />CV PREVITAL “Strategie di prevenzione primaria nella popolazione Italiana” Ministero della Salute, and Associazione Italiana per la Prevenzione dell’Epatite Virale (COPEV)<br />"Fonds Erasme"<br />Fondation Léon Fredericq<br />Fonds de la Recherche Scientifique (FNRS)<br />Consejo Superior de Investigaciones Científicas<br />German Research Foundation (LU 1944/3-1)<br />SciLifeLab/KAW national COVID-19 research program project (KAW 2020.0182)<br />Swedish Research Council (2014-02569 and 2014-07606)<br />Jeansson Stiftelser, Magnus Bergvalls Stiftelse<br />Technical University of Munich, Munich, Germany<br />Genotyping Laboratory of Institute for Molecular Medicine Finland FIMM Technology Centre, University of Helsinki, Helsinki, Finland

Details

ISSN :
00219738
Database :
OpenAIRE
Journal :
Digital.CSIC. Repositorio Institucional del CSIC, instname, J Clin Invest, JOURNAL OF CLINICAL INVESTIGATION, r-IIB SANT PAU. Repositorio Institucional de Producción Científica del Instituto de Investigación Biomédica Sant Pau, Nakanishi, T, Pigazzini, S, Degenhardt, F, Cordioli, M, Butler-Laporte, G, Maya-Miles, D, Bujanda, L, Bouysran, Y, Niemi, M E, Palom, A, Ellinghaus, D, Khan, A, Martínez-Bueno, M, Rolker, S, Amitrano, S, Roade Tato, L, Fava, F, Spinner, C D, Prati, D, Bernardo, D, Garcia, F, Darcis, G, Fernández-Cadenas, I, Holter, J C, Banales, J M, Frithiof, R, Kiryluk, K, Duga, S, Asselta, R, Pereira, A C, Romero-Gómez, M, Nafría-Jiménez, B, Hov, J R, Migeotte, I, Renieri, A, Planas, A M, Ludwig, K U, Buti, M, Rahmouni, S, Alarcón-Riquelme, M E, Schulte, E C, Franke, A, Karlsen, T H, Valenti, L, Zeberg, H, Richards, J B, Ganna, A & FinnGen 2021, ' Age-dependent impact of the major common genetic risk factor for COVID-19 on severity and mortality ', Journal of Clinical Investigation, vol. 131, no. 23, e152386 . https://doi.org/10.1172/JCI152386, Digibug. Repositorio Institucional de la Universidad de Granada, J. Clin. Invest. 131:e152386 (2021), medRxiv, article-version (status) pre, article-version (number) 1, medRxiv :the preprint server for health sciences, The Journal of Clinical Investigation, UVaDOC. Repositorio Documental de la Universidad de Valladolid, Dipòsit Digital de Documents de la UAB, Universitat Autònoma de Barcelona, The Journal of clinical investigation
Accession number :
edsair.doi.dedup.....072b3b458bc3f70eaadcf0163001b42e