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From Detection of Individual Metastases to Classification of Lymph Node Status at the Patient Level: The CAMELYON17 Challenge
- Source :
- Bandi, P, Geessink, O, Manson, Q, van Dijk, M, Balkenhol, M, Hermsen, M, Bejnordi, B E, Lee, B, Paeng, K, Zhong, A, Li, Q, Zanjani, F G, Zinger, S, Fukuta, K, Komura, D, Ovtcharov, V, Cheng, S, Zeng, S, Thagaard, J, Dahl, A B, Lin, H, Chen, H, Jacobsson, L, Hedlund, M, Cetin, M, Halici, E, Jackson, H, Chen, R, Both, F, Franke, J, Kusters-Vandevelde, H, Vreuls, W, Bult, P, van Ginneken, B, van der Laak, J & Litjens, G 2018, ' From detection of individual metastases to classification of lymph node status at the patient level: the CAMELYON17 challenge ', I E E E Transactions on Medical Imaging, vol. 38, no. 2, pp. 550-560 . https://doi.org/10.1109/TMI.2018.2867350, IEEE Transactions on Medical Imaging, 38, 2, pp. 550-560, IEEE Transactions on Medical Imaging, 38, 550-560, IEEE Transactions on Medical Imaging, 38(2):8447230, 550-560. Institute of Electrical and Electronics Engineers
- Publication Year :
- 2019
-
Abstract
- Automated detection of cancer metastases in lymph nodes has the potential to improve the assessment of prognosis for patients. To enable fair comparison between the algorithms for this purpose, we set up the CAMELYON17 challenge in conjunction with the IEEE International Symposium on Biomedical Imaging 2017 Conference in Melbourne. Over 300 participants registered on the challenge website, of which 23 teams submitted a total of 37 algorithms before the initial deadline. Participants were provided with 899 whole-slide images (WSIs) for developing their algorithms. The developed algorithms were evaluated based on the test set encompassing 100 patients and 500 WSIs. The evaluation metric used was a quadratic weighted Cohen's kappa. We discuss the algorithmic details of the 10 best pre-conference and two post-conference submissions. All these participants used convolutional neural networks in combination with pre- and postprocessing steps. Algorithms differed mostly in neural network architecture, training strategy, and pre- and postprocessing methodology. Overall, the kappa metric ranged from 0.89 to -0.13 across all submissions. The best results were obtained with pre-trained architectures such as ResNet. Confusion matrix analysis revealed that all participants struggled with reliably identifying isolated tumor cells, the smallest type of metastasis, with detection rates below 40%. Qualitative inspection of the results of the top participants showed categories of false positives, such as nerves or contamination, which could be targeted for further optimization. Last, we show that simple combinations of the top algorithms result in higher kappa metric values than any algorithm individually, with 0.93 for the best combination.
- Subjects :
- Whole-slide images
Computer science
SDG 3 – Goede gezondheid en welzijn
computer.software_genre
Convolutional neural network
Metastasis
030218 nuclear medicine & medical imaging
0302 clinical medicine
Breast cancer
Biomedical imaging
Pathology
False positive paradox
Lymph nodes
Lymph node
Grand challenge
Women's cancers Radboud Institute for Molecular Life Sciences [Radboudumc 17]
Radiological and Ultrasound Technology
Histological Techniques
Hospitals
Women's cancers Radboud Institute for Health Sciences [Radboudumc 17]
Computer Science Applications
grand challenge
medicine.anatomical_structure
Lymphatic Metastasis
Urological cancers Radboud Institute for Health Sciences [Radboudumc 15]
Metric (mathematics)
Female
Sentinel Lymph Node
Algorithms
Sentinel lymph node
lymph node metastases
Rare cancers Radboud Institute for Health Sciences [Radboudumc 9]
Breast Neoplasms
Machine learning
Set (abstract data type)
03 medical and health sciences
All institutes and research themes of the Radboud University Medical Center
SDG 3 - Good Health and Well-being
Image Interpretation, Computer-Assisted
medicine
Humans
Electrical and Electronic Engineering
Tumors
business.industry
whole-slide images
Cancer
Confusion matrix
medicine.disease
Test set
Artificial intelligence
business
computer
Lymph node metastases
Software
Kappa
Subjects
Details
- ISSN :
- 02780062
- Volume :
- 38
- Database :
- OpenAIRE
- Journal :
- IEEE Transactions on Medical Imaging
- Accession number :
- edsair.doi.dedup.....05a601529cc742865fed64af18995ac2
- Full Text :
- https://doi.org/10.1109/tmi.2018.2867350