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From Detection of Individual Metastases to Classification of Lymph Node Status at the Patient Level: The CAMELYON17 Challenge

Authors :
Jörg Franke
Keisuke Fukuta
Hao Chen
Willem Vreuls
Aoxiao Zhong
Farhad Ghazvinian Zanjani
Svitlana Zinger
Richard J. Chen
Hunter Jackson
Fabian Both
Heidi V.N. Küsters-Vandevelde
Daisuke Komura
Babak Ehteshami Bejnordi
Marcory C. R. F. van Dijk
Bram van Ginneken
Eren Halici
Ludwig Jacobsson
Vlado Ovtcharov
Quanzheng Li
Jeroen van der Laak
Peter Bult
Oscar Geessink
Melih cetin
Shaoqun Zeng
Geert Litjens
Martin Hedlund
Anders Bjorholm Dahl
Byungjae Lee
Péter Bándi
Huangjing Lin
Jeppe Thagaard
Quirine F. Manson
Meyke Hermsen
Shenghua Cheng
Kyunghyun Paeng
Maschenka Balkenhol
Video Coding & Architectures
Center for Care & Cure Technology Eindhoven
Biomedical Diagnostics Lab
Source :
Bandi, P, Geessink, O, Manson, Q, van Dijk, M, Balkenhol, M, Hermsen, M, Bejnordi, B E, Lee, B, Paeng, K, Zhong, A, Li, Q, Zanjani, F G, Zinger, S, Fukuta, K, Komura, D, Ovtcharov, V, Cheng, S, Zeng, S, Thagaard, J, Dahl, A B, Lin, H, Chen, H, Jacobsson, L, Hedlund, M, Cetin, M, Halici, E, Jackson, H, Chen, R, Both, F, Franke, J, Kusters-Vandevelde, H, Vreuls, W, Bult, P, van Ginneken, B, van der Laak, J & Litjens, G 2018, ' From detection of individual metastases to classification of lymph node status at the patient level: the CAMELYON17 challenge ', I E E E Transactions on Medical Imaging, vol. 38, no. 2, pp. 550-560 . https://doi.org/10.1109/TMI.2018.2867350, IEEE Transactions on Medical Imaging, 38, 2, pp. 550-560, IEEE Transactions on Medical Imaging, 38, 550-560, IEEE Transactions on Medical Imaging, 38(2):8447230, 550-560. Institute of Electrical and Electronics Engineers
Publication Year :
2019

Abstract

Automated detection of cancer metastases in lymph nodes has the potential to improve the assessment of prognosis for patients. To enable fair comparison between the algorithms for this purpose, we set up the CAMELYON17 challenge in conjunction with the IEEE International Symposium on Biomedical Imaging 2017 Conference in Melbourne. Over 300 participants registered on the challenge website, of which 23 teams submitted a total of 37 algorithms before the initial deadline. Participants were provided with 899 whole-slide images (WSIs) for developing their algorithms. The developed algorithms were evaluated based on the test set encompassing 100 patients and 500 WSIs. The evaluation metric used was a quadratic weighted Cohen's kappa. We discuss the algorithmic details of the 10 best pre-conference and two post-conference submissions. All these participants used convolutional neural networks in combination with pre- and postprocessing steps. Algorithms differed mostly in neural network architecture, training strategy, and pre- and postprocessing methodology. Overall, the kappa metric ranged from 0.89 to -0.13 across all submissions. The best results were obtained with pre-trained architectures such as ResNet. Confusion matrix analysis revealed that all participants struggled with reliably identifying isolated tumor cells, the smallest type of metastasis, with detection rates below 40%. Qualitative inspection of the results of the top participants showed categories of false positives, such as nerves or contamination, which could be targeted for further optimization. Last, we show that simple combinations of the top algorithms result in higher kappa metric values than any algorithm individually, with 0.93 for the best combination.

Details

ISSN :
02780062
Volume :
38
Database :
OpenAIRE
Journal :
IEEE Transactions on Medical Imaging
Accession number :
edsair.doi.dedup.....05a601529cc742865fed64af18995ac2
Full Text :
https://doi.org/10.1109/tmi.2018.2867350