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Merging of synchrotron serial crystallographic data by a genetic algorithm

Authors :
Alejandro de Maria
Chloe Zubieta
Catarina S. Silva
Michele Cianci
Max H. Nanao
Ulrich Zander
Nicolas Foos
Luca Mazzei
European Synchrotron Radiation Facility (ESRF)
European Molecular Biology Laboratory [Hamburg] (EMBL)
Physiologie cellulaire et végétale (LPCV)
Université Grenoble Alpes [2016-2019] (UGA [2016-2019])-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Recherche Agronomique (INRA)-Institut de Recherche Interdisciplinaire de Grenoble (IRIG)
Direction de Recherche Fondamentale (CEA) (DRF (CEA))
Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Direction de Recherche Fondamentale (CEA) (DRF (CEA))
Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)
Laboratory of Bioinorganic Chemistry, Department of Pharmacy and Biotechnology, University of Bologna, Viale Giuseppe Fanin, 40, 40127 Bologna, Italy
Unit for Virus Host-Cell Interactions [Grenoble] (UVHCI)
Centre National de la Recherche Scientifique (CNRS)-European Molecular Biology Laboratory [Grenoble] (EMBL)-Université Joseph Fourier - Grenoble 1 (UJF)
K. Diederichs
Institut National de la Recherche Agronomique (INRA)-Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes (UGA)-Institut de Recherche Interdisciplinaire de Grenoble (IRIG)
Université Joseph Fourier - Grenoble 1 (UJF)-European Molecular Biology Laboratory [Grenoble] (EMBL)-Centre National de la Recherche Scientifique (CNRS)
Institut National de la Recherche Agronomique (INRA)-Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes [2016-2019] (UGA [2016-2019])-Institut de Recherche Interdisciplinaire de Grenoble (IRIG)
Alma Mater Studiorum Università di Bologna [Bologna] (UNIBO)
Nanao, Max H.
Source :
Acta crystallographica / D 72(9), 1026-1035 (2016). doi:10.1107/S2059798316012079, Acta crystallographica. Section D, Structural biology, Acta crystallographica. Section D, Structural biology, International Union of Crystallography, 2016, 72 (9), pp.1026-1035. ⟨10.1107/S2059798316012079⟩, Acta crystallographica Section D : Structural biology [1993-...], Acta crystallographica Section D : Structural biology [1993-..], 2016, 72 (9), pp.1026-1035. ⟨10.1107/S2059798316012079⟩, 'Acta Crystallographica D ', vol: 72, pages: 1026-1035 (2016), Acta Crystallographica. Section D, Structural Biology, Acta Crystallographica. Section D, Structural Biology (72), 1026-1035. (2016)
Publication Year :
2016
Publisher :
Wiley-Blackwell, 2016.

Abstract

Acta crystallographica / D 72(9), 1026 - 1035(2016). doi:10.1107/S2059798316012079<br />Recent advances in macromolecular crystallography have made it practical to rapidly collect hundreds of sub-data sets consisting of small oscillations of incomplete data. This approach, generally referred to as serial crystallography, has many uses, including an increased effective dose per data set, the collection of data from crystals without harvesting (in situ data collection) and studies of dynamic events such as catalytic reactions. However, selecting which data sets from this type of experiment should be merged can be challenging and new methods are required. Here, it is shown that a genetic algorithm can be used for this purpose, and five case studies are presented in which the merging statistics are significantly improved compared with conventional merging of all data.<br />Published by Wiley-Blackwell, Oxford

Details

Language :
English
ISSN :
20597983 and 09074449
Database :
OpenAIRE
Journal :
Acta crystallographica / D 72(9), 1026-1035 (2016). doi:10.1107/S2059798316012079, Acta crystallographica. Section D, Structural biology, Acta crystallographica. Section D, Structural biology, International Union of Crystallography, 2016, 72 (9), pp.1026-1035. ⟨10.1107/S2059798316012079⟩, Acta crystallographica Section D : Structural biology [1993-...], Acta crystallographica Section D : Structural biology [1993-..], 2016, 72 (9), pp.1026-1035. ⟨10.1107/S2059798316012079⟩, 'Acta Crystallographica D ', vol: 72, pages: 1026-1035 (2016), Acta Crystallographica. Section D, Structural Biology, Acta Crystallographica. Section D, Structural Biology (72), 1026-1035. (2016)
Accession number :
edsair.doi.dedup.....03ad03498e29e2e1da6abee86f7331ab