Gene Ontology based gene analysis in graph database environment

Authors :: Kozielski, Michał
Stypka, Łukasz
Publication Year :: 2013
Publisher :: Silesian University of Technology Press, 2013.
Abstract: The article presents evaluation of the application of Neo4j graph database to Gene Ontology graph analysis. Graph-based term similarity measures are calculated in order to assess the effectiveness of the system. Two types of common ancestor search are presented and evaluated, and parallel execution of the analysis is also evaluated.<br />Studia Informatica, Vol 34, No 2A (2013)