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A transcriptome resource for the Arctic Cod (Boreogadus saida)
- Source :
- Marine Genomics. 41:57-61
- Publication Year :
- 2018
- Publisher :
- Elsevier BV, 2018.
-
Abstract
- Arctic Cod (Boreogadus saida) serve as an important link in Arctic food webs and are thus considered an important species for environmental monitoring. RNA-Seq was conducted on samples from wild-collected individuals representing various age classes and tissue types to obtain as complete a transcriptome as possible on an Illumina MiSeq, which resulted in a total of 64,457 transcripts with an average length of 295 bp. We identified well-known genes that are associated with temperature change or response to pollutants. This RNA-Seq effort provides the first insight into the B. saida transcriptome, which can be a starting point for investigations identifying genes for local adaptation and genomic responses to future environmental change.
Details
- ISSN :
- 18747787
- Volume :
- 41
- Database :
- OpenAIRE
- Journal :
- Marine Genomics
- Accession number :
- edsair.doi...........b89128025ff8dcd7d1fc2aa77b864362
- Full Text :
- https://doi.org/10.1016/j.margen.2018.03.003