Back to Search Start Over

A transcriptome resource for the Arctic Cod (Boreogadus saida)

Authors :
Damian M. Menning
Kate Wedemeyer
Robert E. Wilson
Sandra L. Talbot
Source :
Marine Genomics. 41:57-61
Publication Year :
2018
Publisher :
Elsevier BV, 2018.

Abstract

Arctic Cod (Boreogadus saida) serve as an important link in Arctic food webs and are thus considered an important species for environmental monitoring. RNA-Seq was conducted on samples from wild-collected individuals representing various age classes and tissue types to obtain as complete a transcriptome as possible on an Illumina MiSeq, which resulted in a total of 64,457 transcripts with an average length of 295 bp. We identified well-known genes that are associated with temperature change or response to pollutants. This RNA-Seq effort provides the first insight into the B. saida transcriptome, which can be a starting point for investigations identifying genes for local adaptation and genomic responses to future environmental change.

Details

ISSN :
18747787
Volume :
41
Database :
OpenAIRE
Journal :
Marine Genomics
Accession number :
edsair.doi...........b89128025ff8dcd7d1fc2aa77b864362
Full Text :
https://doi.org/10.1016/j.margen.2018.03.003