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High-Quality Genome Resource of Clonostachys rosea Strain CanS41 by Oxford Nanopore Long-Read Sequencing
- Source :
- Plant Disease. 105:2231-2234
- Publication Year :
- 2021
- Publisher :
- Scientific Societies, 2021.
-
Abstract
- Clonostachys rosea is a necrotrophic mycoparasitic fungus with excellent biological control ability against numerous fungal plant pathogens. Here, we performed genomic sequencing of C. rosea strain CanS41 using Oxford Nanopore sequencing technology. We generated a high-quality genome assembly (>99.99% accuracy), which comprised 26 contigs containing 60.68 Mb sequences with a GC content of 48.55% and a repeat content of 8.38%. The N50 contig length is 3.02 Mb. In total, 20,818 protein-coding genes were identified and functionally annotated. Genes encoding secreted proteins and carbohydrate-active enzymes as well as secondary metabolic gene clusters were also identified and analyzed. In summary, the high-quality genome assembly and gene annotation provided here will allow further exploration of biological functions and enhance biological control ability of C. rosea.
- Subjects :
- 0303 health sciences
Contig
Strain (biology)
Sequence assembly
Plant Science
Computational biology
Gene Annotation
Biology
Genome
03 medical and health sciences
0302 clinical medicine
Nanopore sequencing
Agronomy and Crop Science
Gene
030217 neurology & neurosurgery
GC-content
030304 developmental biology
Subjects
Details
- ISSN :
- 19437692 and 01912917
- Volume :
- 105
- Database :
- OpenAIRE
- Journal :
- Plant Disease
- Accession number :
- edsair.doi...........b294b58b5540b539a3d097232fdea121