Novelty in three-finger toxin evolution

Snakes are a striking taxon on many levels and have an indelible place in the collective culture of humanity. This is due to a number of unusual features including their limblessness, ability to ingest large prey, but most importantly their venom. From a biological perspective, snakes are equally fascinating, showing how a simple body plan can be used to great effect in an extremely broad variety of niches. Snakes are globally distributed and ecologically diverse; as a result, since recent research has shown that most snakes are venomous to some degree, their venom is equally diverse. This thesis focuses on one major toxin family: three-finger toxins (3FTx). These toxins can be found in virtually all venomous snake lineages and are often neurotoxic. Since their original recruitment there have been numerous instances of structural and functional innovation within this toxin family. The research in this thesis pertains to several such novel adaptations in snakes of the colubrid and elapid families, many of whose venom is composed primarily of these toxins.Chapter 2 deals with the ancestral version 3FTx and how, in the colubrine genus Boiga, simple mutations in toxins can lead to structural changes, in this case additional cysteines enable the formation of dimeric toxins with increased potency. These novel toxins can, in turn, open up new niches to the snakes which possess those toxins. In B. irregularis they facilitated a destructive invasion event and may have similarly assisted in the spread of an ancestral Boiga since our research shows that several other species possess similar dimeric toxins. This echoes a process that occurred in the ancestor of the elapids where the loss of a pair of cysteines and their disulfide bond was followed by an incredible diversification of these toxins and the snakes that produce them. Chapter 3 explores venom composition and activity of the genus Calliophis, the most basal genus of the elapids. C. bivirgatus and C. intestinalis both possess extremely elongated venom glands and each produce 3FTx with novel sodium channel toxicity. However, the two venoms produce opposite effects from one another. These results suggests some intriguing possibilities about the evolutionary history of these novel traits in Calliophis and the general composition of their venoms inform our understanding of how the venoms of more derived elapids evolved.Chapters 4 and 5 focus on the genus Micrurus. This genus from the Americas is by far the most speciose genus of elapids and belongs to the coral snake clade which is the next branch in the phylogeny of the elapids after Calliophis. The venoms of these snakes all contain a high number of unique 3FTx, though some venoms may be dominated by PLA2 toxins in terms of overall composition. Chapter 4 focuses on the sequence diversity of 3FTx from this genus and the selection regimes under which they operate. This diversity may lay the groundwork for rapid changes in the toxin composition of the venom and accompanying changes in venom activity. Chapter 5 directly assesses the neurotoxic activity of 3FTx by testing the affinity of toxins in Micrurus venoms to the binding site of nicotinic acetycholine receptors from a wide sampling of other vertebrates. This is the known site of action for many 3FTx and bears out some of the predictions made in Chapter 4. The venoms in this study represent a diverse selection of species in terms of geography, phylogeny, and ecology and the variation in venom efficacy across targets shows clear phylogenetic trends, but that changes in expression levels or toxin sequences can facilitate the shift from one niche to another.Because of the fairly direct link from genotype to phenotype, relatively small biochemical novelties in certain toxins can lead to large ecological shifts and influence the evolution of large clades of snakes and those species that coevolve with them. Taken together, this research provides a look at several such novelties and their continuing impact on the relevant organisms. There have been many more such occurrences within the 3FTx alone, to say nothing of other toxin families. If the patterns we find in our research hold true, then many other major events in the history of snake evolution may have co-occurred with similar novel venom phenotypes.