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Characterization of the complete chloroplast genome of Sanicula rubriflora F. Schmidt ex Maxim
- Source :
- Mitochondrial DNA Part B. 6:1999-2000
- Publication Year :
- 2021
- Publisher :
- Informa UK Limited, 2021.
-
Abstract
- Sanicula rubriflora refers to a kind of edible wild herbs, which possesses reputed medicinal value. Chloroplasts (cp) is essential organelle in plant cells and has a genome that can be inherited autonomously. The complete chloroplast genome of S. rubriflora was assemble and annotated in the present study. It was a circular molecular genome with a size of 155,700 bp in length, which has a typical quadripartite structure. For instance, a large single-copy (LSC) of 85,979 bp and a pair of inverted repeats (IRs) of 26,333 bp were disconnected by a small single-copy (SSC) of 17,053bp. A total of 130 genes have been annotated, including 86 protein-coding genes (PCGs), 36 transfer RNA genes (tRNAs) and 8 ribosomal RNA genes (rRNAs). The total GC content of the complete chloroplast genome reached 37.9%. A maximum likelihood phylogenetic analysis with the reported chloroplast genomes revealed that S. rubriflora is most closely related to Saniculachinensis in the phylogenetic relationships.
- Subjects :
- 0106 biological sciences
0301 basic medicine
Genetics
Phylogenetic tree
Inverted repeat
food and beverages
Biology
biology.organism_classification
010603 evolutionary biology
01 natural sciences
Genome
Sanicula
03 medical and health sciences
030104 developmental biology
Phylogenetics
Transfer RNA
Molecular Biology
Gene
GC-content
Subjects
Details
- ISSN :
- 23802359
- Volume :
- 6
- Database :
- OpenAIRE
- Journal :
- Mitochondrial DNA Part B
- Accession number :
- edsair.doi...........8307de9da6666792c96139b506a60d94