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Characterization of the complete chloroplast genome of Sanicula rubriflora F. Schmidt ex Maxim

Authors :
Weichao Ren
Wei Ma
Meiqi Zhang
Zhen Wang
Yunwei Liu
Song Yan
Source :
Mitochondrial DNA Part B. 6:1999-2000
Publication Year :
2021
Publisher :
Informa UK Limited, 2021.

Abstract

Sanicula rubriflora refers to a kind of edible wild herbs, which possesses reputed medicinal value. Chloroplasts (cp) is essential organelle in plant cells and has a genome that can be inherited autonomously. The complete chloroplast genome of S. rubriflora was assemble and annotated in the present study. It was a circular molecular genome with a size of 155,700 bp in length, which has a typical quadripartite structure. For instance, a large single-copy (LSC) of 85,979 bp and a pair of inverted repeats (IRs) of 26,333 bp were disconnected by a small single-copy (SSC) of 17,053bp. A total of 130 genes have been annotated, including 86 protein-coding genes (PCGs), 36 transfer RNA genes (tRNAs) and 8 ribosomal RNA genes (rRNAs). The total GC content of the complete chloroplast genome reached 37.9%. A maximum likelihood phylogenetic analysis with the reported chloroplast genomes revealed that S. rubriflora is most closely related to Saniculachinensis in the phylogenetic relationships.

Details

ISSN :
23802359
Volume :
6
Database :
OpenAIRE
Journal :
Mitochondrial DNA Part B
Accession number :
edsair.doi...........8307de9da6666792c96139b506a60d94