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Development of a loop-mediated isothermal amplification for rapid diagnosis of Aphelenchoides ritzemabosi
- Source :
- European Journal of Plant Pathology. 155:173-179
- Publication Year :
- 2019
- Publisher :
- Springer Science and Business Media LLC, 2019.
-
Abstract
- To establish the amplification and detection system for the chrysanthemum foliar nematode (CFN), Aphelenchoides ritzemabosi, the loop-mediated isothermal amplification (LAMP), which includes two external primers (F3/B3), two inner primers (FIP/BIP) and one loop primer (LF), was designed based on the CFN 18S ribosomal RNA gene. The DNA samples were amplified by LAMP primers using isothermal amplification (65 °C). The amplified products were detected by electrophoresis and visual inspection of fluorescent dyes. Detection of CFN in a sample was confirmed when the electrophoresis results show a DNA ladder or the mixtures in the tubes showed green fluorescence. The results showed that the LAMP method could not only detect and identify a single female, male, juvenile and egg of CFN but also directly detect CFN in mixed nematode species samples and plant tissue samples. The sensitivity of the LAMP assay was 100-fold dilution of single nematode DNA.
- Subjects :
- 0106 biological sciences
0301 basic medicine
biology
Loop-mediated isothermal amplification
Aphelenchoides ritzemabosi
Plant Science
Horticulture
biology.organism_classification
01 natural sciences
Fluorescence
Molecular biology
18S ribosomal RNA
Foliar nematode
03 medical and health sciences
Electrophoresis
chemistry.chemical_compound
030104 developmental biology
chemistry
Primer (molecular biology)
Agronomy and Crop Science
DNA
010606 plant biology & botany
Subjects
Details
- ISSN :
- 15738469 and 09291873
- Volume :
- 155
- Database :
- OpenAIRE
- Journal :
- European Journal of Plant Pathology
- Accession number :
- edsair.doi...........822e63344553437fe9e053916c3e0b1f