Additional file 1: Figure S1. of Quantitative analysis of chromatin interaction changes upon a 4.3 Mb deletion at mouse 4E2

Result of bias-correction for a simulation of biases in multi-viewpoint 4C experiment (with 100 viewpoints). Figure S2. Overview of PE-4Cseq methodology. Figure S3. Positions of DIRs for all viewpoints 1, 2, 11 and 12 are compared against structural protein binding sites. First track is for Df and + 129 comparisons and second track is for + D Bl6 and + Bl6 comparison. Figure S4. Calculated ν per viewpoint for + D Bl6 vs + Bl6 . + D Bl6 (red squares). Figure S5. Distance distributions between query probes for (A) BACset1, (B) BACset2, (C) BACset3, (D) BACset4, FISH experiments. (DOCX 1390 kb)