Additional file 3 of Compositional analysis of the tonsil microbiota in relationship to Streptococcus suis disease in nursery pigs in Ontario

Additional file 3. Table S1: Total number of pigs before and after data quality filtering. Confirmed cases are pigs that showed clinical signs of S. suis infection and S. suis was found in the systemic sites such as blood, meninges, and/or spleen. Probable cases are pigs that showed clinical signs of S. suis infection but S. suis was not found in the any systemic site. Healthy controls are pigs without clinical signs of S. suis infection. *Samples that were excluded during the rarefying process. Table S2: Non phylogenetics alpha diversity (Observed, Shannon metrics), Reads per sample and phylogenetics (PD) Diversity matrix among the 57 rarefied samples from 18 confirmed, 17 healthy, and 22 probable cases. Table S3: Taxonomic contributions to Dirichlet multinomial mixture (DMM) model components identifying the important taxa that drivers the variances across the samples. Table S4: Top ASVs that are differently abundant between the two DMM community types as identified by ANCOM-BC.