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A Novel Pyroptosis-related Genes Prognostic Signature Affects the Immune Infiltration Patterns in Hepatocellular Carcinoma

Authors :
Bai. Xue-song
Yiqun Jin
Publication Year :
2021
Publisher :
Research Square Platform LLC, 2021.

Abstract

PurposePyroptosis is an inflammatory form of cell death associated with tumorigenesis and progression. However, the prognostic value of pyroptosis-related genes (PRGs) in hepatocellular carcinoma (HCC) have not been elucidated.MethodsWe downloaded mRNA expression profiles and clinical information from TCGA and ICGC database. Then, differently expressed PRGs were screened to construct a multigene prognostic signature by least absolute contraction and selection operator (LASSO) Cox regression method in TCGA cohort. Date from ICGC was used to validate the robustness of this signature. Kaplan-Meier analysis was used to compare overall survival (OS) between high- and low-risk group. Univariate and multivariate Cox analysis were performed to identify the independent prognostic value of the signature. Gene set enrichment analysis (GSEA) was utilized to conduct GO and KEGG analysis. Single-sample gene set enrichment analysis was implemented to assess the immune cell infiltration and immune-related function. TIDE algorithm evaluated the significance of this signature in predicting immunotherapeutic sensitivity. ResultsAn 8-PRGs prognostic model was established. The OS of low-risk group was significantly increased compared to high-risk group. Receiver operating characteristic curve showed the model had a good prognostic predictive accuracy. Cox regression analysis proved the model an independent predictor for OS in HCC. GSEA indicated that the risk score was associated with immune response. Furthermore, different subgroups exhibited different immunoinfiltration patterns, different immune-checkpoint levels and different potential responses for immune-checkpoint blockade therapy.ConclusionAn 8-PRGs signature can predict the prognosis of HCC patients and may act as an immunotherapeutic potential target for HCC.

Details

Database :
OpenAIRE
Accession number :
edsair.doi...........5a51a691dd2b3e4017e84153af92a19f