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Linear compartmental systems. IV. A software, under MS-Windows, for obtaining the instantaneous species concentrations in enzyme systems

Authors :
M. Amo
Manuela García-Moreno
Enrique Arribas
Ramón Varón
Ricardo Gomez-Ladron de Guevara
Maria del Mar Garcia-Molina
Maria D. Masia
Milagros Molina-Alarcón
Francisco García-Sevilla
Source :
Journal of Mathematical Chemistry. 52:1675-1689
Publication Year :
2014
Publisher :
Springer Science and Business Media LLC, 2014.

Abstract

Software application is implemented in this work to take full advantage of the characteristics of current operating systems and to provide the optimized symbolic kinetic equations for both enzyme and ligand species involved in enzyme reactions. This software, called SKEE-w2013, is implemented using C# language and runs under all operating systems from Windows XP up to Windows 8. It is applicable to any enzyme reaction mechanism that fits the general reaction scheme proposed previously by our group. It can be downloaded, free of charge, from http://oretano.iele-ab.uclm.es/~BioChem-mg/software.php . Besides the optimized equations, the software can provide non-optimized equations, so that the user can compare the advantage of using optimized equations rather than the non-optimized ones, whenever they do not coincide. Moreover, the software circumvents the limitations of other existing previous software tools implemented with what are nowadays obsolete programming languages and that, moreover, are limited to non-optimized kinetic equations.

Details

ISSN :
15728897 and 02599791
Volume :
52
Database :
OpenAIRE
Journal :
Journal of Mathematical Chemistry
Accession number :
edsair.doi...........5a156cf94b197a529d15f9be669c807a
Full Text :
https://doi.org/10.1007/s10910-014-0361-x