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Characterization of the complete chloroplast genome of Elaeagnus mollis, a rare and endangered oil plant
- Source :
- Conservation Genetics Resources. 9:439-442
- Publication Year :
- 2017
- Publisher :
- Springer Science and Business Media LLC, 2017.
-
Abstract
- Elaeagnus mollis is a rare and endangered oil tree species endemic to China. Here we assembled and characterized its whole chloroplast (cp) genome using Illumina pair-end sequencing data. The E. mollis cp genome was 151,428 bp in length, containing a large single copy region (LSC) of 81,003 bp and a small single copy region (SSC) of 18,561 bp separated by a pair of inverted repeats (IRs) of 25,932 bp. The genome possessed 131 genes, including 85 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. Most of genes occurred as single-copy, while 18 gene species had two copies. The overall GC content of the E. mollis cp genome was 37.0%, and the corresponding values of LSC, SSC and IR regions were 35.0, 30.3 and 42.2%, respectively. The phylogenomic analysis revealed that E. mollis clustered with E. macrophylla in Elaeagnaceae, which was closely related to Moraceae and Cannabaceae belonging to Rosales.
- Subjects :
- 0106 biological sciences
0301 basic medicine
Genetics
biology
Inverted repeat
Rosales
Ribosomal RNA
biology.organism_classification
010603 evolutionary biology
01 natural sciences
Genome
03 medical and health sciences
030104 developmental biology
Phylogenomics
Botany
Elaeagnaceae
Gene
Ecology, Evolution, Behavior and Systematics
GC-content
Subjects
Details
- ISSN :
- 18777260 and 18777252
- Volume :
- 9
- Database :
- OpenAIRE
- Journal :
- Conservation Genetics Resources
- Accession number :
- edsair.doi...........47d5a3a1574b28095e68838ccc9178e1
- Full Text :
- https://doi.org/10.1007/s12686-017-0706-4