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Characterization of the complete chloroplast genome of Elaeagnus mollis, a rare and endangered oil plant

Authors :
Si-Yun Chen
Wen-Cai Wang
Xian-Zhi Zhang
Source :
Conservation Genetics Resources. 9:439-442
Publication Year :
2017
Publisher :
Springer Science and Business Media LLC, 2017.

Abstract

Elaeagnus mollis is a rare and endangered oil tree species endemic to China. Here we assembled and characterized its whole chloroplast (cp) genome using Illumina pair-end sequencing data. The E. mollis cp genome was 151,428 bp in length, containing a large single copy region (LSC) of 81,003 bp and a small single copy region (SSC) of 18,561 bp separated by a pair of inverted repeats (IRs) of 25,932 bp. The genome possessed 131 genes, including 85 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. Most of genes occurred as single-copy, while 18 gene species had two copies. The overall GC content of the E. mollis cp genome was 37.0%, and the corresponding values of LSC, SSC and IR regions were 35.0, 30.3 and 42.2%, respectively. The phylogenomic analysis revealed that E. mollis clustered with E. macrophylla in Elaeagnaceae, which was closely related to Moraceae and Cannabaceae belonging to Rosales.

Details

ISSN :
18777260 and 18777252
Volume :
9
Database :
OpenAIRE
Journal :
Conservation Genetics Resources
Accession number :
edsair.doi...........47d5a3a1574b28095e68838ccc9178e1
Full Text :
https://doi.org/10.1007/s12686-017-0706-4