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The complete plastome of Nyssa yunnanensis, a critically endangered tree species
- Source :
- Conservation Genetics Resources. 11:313-315
- Publication Year :
- 2018
- Publisher :
- Springer Science and Business Media LLC, 2018.
-
Abstract
- Nyssa yunnanensis is a critically endangered species endemic to China. Here, we assembled and characterized the plastome of N. yunnanensis using Illumina paired-end data. The assembled plastome is 156,544 base pairs (bp) in length, containing a large single-copy (LSC) region of 86,056 bp, a small single-copy (SSC) region of 18,262 bp, and two inverted repeat (IR) regions of 26,113 bp. The plastome possesses total 125 genes, including 81 protein-coding genes, eight rRNA genes, and 36 tRNA genes. In addition, the overall GC-content of the whole plastome is 37.9%, while the corresponding values of the LSC, SSC, and IR regions are 36.0, 32.2, and 43.0%, respectively. Furthermore, phylogenetic analyses show that N. yunnanensis is closely related to the species of Camptotheca acuminata.
- Subjects :
- 0106 biological sciences
0301 basic medicine
Nyssa yunnanensis
Phylogenetic tree
Inverted repeat
Biology
Ribosomal RNA
biology.organism_classification
010603 evolutionary biology
01 natural sciences
03 medical and health sciences
Critically endangered
030104 developmental biology
Chloroplast DNA
Botany
Transfer RNA
Genetics
Gene
Ecology, Evolution, Behavior and Systematics
Subjects
Details
- ISSN :
- 18777260 and 18777252
- Volume :
- 11
- Database :
- OpenAIRE
- Journal :
- Conservation Genetics Resources
- Accession number :
- edsair.doi...........40743269934afa522c70ac412826af83