Back to Search
Start Over
The complete chloroplast genome of a rare orchid species Liparis loeselii (L.)
- Source :
- Conservation Genetics Resources. 10:305-308
- Publication Year :
- 2017
- Publisher :
- Springer Science and Business Media LLC, 2017.
-
Abstract
- Liparis loeselii is a rare orchid species protected in Europe, in some parts of North America and worldwide in scope of the Washington Convention (CITES). Nowadays, the range of L. loeselii is declining, mainly due to loss of its natural habitat. In this study, we reported the complete plastid (cp) genome of L. loeselii from Next-Generation Sequencing. The whole genome was 153,687 bp, consisting of a pair of inverted repeats of 25,709 bp, large single copy region and a small single copy region (84,596 and 17,673 bp in length, respectively). The cp genome contained 140 genes, including 81 protein-coding genes, 40 trRNA genes and 8 rRNA genes. The overall GC content of the whole genome was 36.9%. A neighbour-joining phylogenetic analysis demonstrated a close relationship between L. loeselii and Dendrobium officinale.
- Subjects :
- 0106 biological sciences
0301 basic medicine
Genetics
Phylogenetic tree
Inverted repeat
Ribosomal RNA
Biology
biology.organism_classification
010603 evolutionary biology
01 natural sciences
Genome
03 medical and health sciences
030104 developmental biology
Liparis
Botany
Plastid
Gene
Ecology, Evolution, Behavior and Systematics
GC-content
Subjects
Details
- ISSN :
- 18777260 and 18777252
- Volume :
- 10
- Database :
- OpenAIRE
- Journal :
- Conservation Genetics Resources
- Accession number :
- edsair.doi...........2561ff5b005309e32edf769f96467b0e