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TOF-SIMS imaging technique with information entropy
- Source :
- Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms. 232:146-152
- Publication Year :
- 2005
- Publisher :
- Elsevier BV, 2005.
-
Abstract
- Time-of-flight secondary ion mass spectrometry (TOF-SIMS) is capable of chemical imaging of proteins on insulated samples in principal. However, selection of specific peaks related to a particular protein, which are necessary for chemical imaging, out of numerous candidates had been difficult without an appropriate spectrum analysis technique. Therefore multivariate analysis techniques, such as principal component analysis (PCA), and analysis with mutual information defined by information theory, have been applied to interpret SIMS spectra of protein samples. In this study mutual information was applied to select specific peaks related to proteins in order to obtain chemical images. Proteins on insulated materials were measured with TOF-SIMS and then SIMS spectra were analyzed by means of the analysis method based on the comparison using mutual information. Chemical mapping of each protein was obtained using specific peaks related to each protein selected based on values of mutual information. The results of TOF-SIMS images of proteins on the materials provide some useful information on properties of protein adsorption, optimality of immobilization processes and reaction between proteins. Thus chemical images of proteins by TOF-SIMS contribute to understand interactions between material surfaces and proteins and to develop sophisticated biomaterials.
- Subjects :
- Chemical imaging
Quantitative Biology::Biomolecules
Nuclear and High Energy Physics
Chemistry
Quantitative Biology::Molecular Networks
Analytical chemistry
Mutual information
Information theory
Quantitative Biology::Subcellular Processes
Secondary ion mass spectrometry
Principal component analysis
Imaging technique
Spectrum analysis
Biological system
Instrumentation
Protein adsorption
Subjects
Details
- ISSN :
- 0168583X
- Volume :
- 232
- Database :
- OpenAIRE
- Journal :
- Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms
- Accession number :
- edsair.doi...........18a4c518f91988ccab41791376bf25e1
- Full Text :
- https://doi.org/10.1016/j.nimb.2005.03.037