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Cryo-EM structure of Pol κ−DNA−PCNA holoenzyme and implications for polymerase switching in DNA lesion bypass

Authors :
Ramon Crehuet
Claudia Lancey
Muhammad Tehseen
Samir M. Hamdan
Timothy J. Ragan
Masateru Takahashi
Mohamed Abdelmaboud Sobhy
Alfredo De Biasio
Publication Year :
2020
Publisher :
Cold Spring Harbor Laboratory, 2020.

Abstract

Replacement of the stalled replicative polymerase (Pol δ) at a DNA lesion by the error-prone DNA polymerase κ (Pol κ) restarts synthesis past the lesion to prevent genome instability. The switching from Pol δ to Pol κ is mediated by the processivity clamp PCNA but the structural basis of this mechanism is unknown. We determined the Cryo-EM structures of human Pol κ–DNA–PCNA complex and of a stalled Pol δ–DNA–PCNA complex at 3.9 and 4.7 Å resolution, respectively. In Pol κ complex, the C-terminus of the PAD domain docks the catalytic core to one PCNA protomer in an angled orientation, bending the DNA exiting Pol κ active site through PCNA. In Pol δ complex, the DNA is disengaged from the active site but is retained by the thumb domain. We present a model for polymerase switching facilitated by Pol κ recruitment to PCNA and Pol κ conformational sampling to seize the DNA from stalled Pol δ assisted by PCNA tilting.

Details

Database :
OpenAIRE
Accession number :
edsair.doi...........0c21b85d37d8150796d31729cb5379f7