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Excavating FAIR Data: the Case of the Multicenter Animal Spinal Cord Injury Study (MASCIS), Blood Pressure, and Neuro-Recovery
- Source :
- Neuroinformatics. 20:39-52
- Publication Year :
- 2021
- Publisher :
- Springer Science and Business Media LLC, 2021.
-
Abstract
- Meta-analyses suggest that the published literature represents only a small minority of the total data collected in biomedical research, with most becoming ‘dark data’ unreported in the literature. Dark data is due to publication bias toward novel results that confirm investigator hypotheses and omission of data that do not. Publication bias contributes to scientific irreproducibility and failures in bench-to-bedside translation. Sharing dark data by making it Findable, Accessible, Interoperable, and Reusable (FAIR) may reduce the burden of irreproducible science by increasing transparency and support data-driven discoveries beyond the lifecycle of the original study. We illustrate feasibility of dark data sharing by recovering original raw data from the Multicenter Animal Spinal Cord Injury Study (MASCIS), an NIH-funded multi-site preclinical drug trial conducted in the 1990s that tested efficacy of several therapies after a spinal cord injury (SCI). The original drug treatments did not produce clear positive results and MASCIS data were stored in boxes for more than two decades. The goal of the present study was to independently confirm published machine learning findings that perioperative blood pressure is a major predictor of SCI neuromotor outcome (Nielson et al., 2015). We recovered, digitized, and curated the data from 1125 rats from MASCIS. Analyses indicated that high perioperative blood pressure at the time of SCI is associated with poorer health and worse neuromotor outcomes in more severe SCI, whereas low perioperative blood pressure is associated with poorer health and worse neuromotor outcome in moderate SCI. These findings confirm and expand prior results that a narrow window of blood-pressure control optimizes outcome, and demonstrate the value of recovering dark data for assessing reproducibility of findings with implications for precision therapeutic approaches.
- Subjects :
- 0303 health sciences
medicine.medical_specialty
Drug trial
Neurology
business.industry
General Neuroscience
Publication bias
Perioperative
medicine.disease
Dark data
03 medical and health sciences
0302 clinical medicine
Blood pressure
Physical medicine and rehabilitation
Medicine
business
Raw data
Spinal cord injury
030217 neurology & neurosurgery
Software
030304 developmental biology
Information Systems
Subjects
Details
- ISSN :
- 15590089 and 15392791
- Volume :
- 20
- Database :
- OpenAIRE
- Journal :
- Neuroinformatics
- Accession number :
- edsair.doi...........09d5f79e5dd8b03a97e138f072ec7b00
- Full Text :
- https://doi.org/10.1007/s12021-021-09512-z