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The rigid core and flexible surface of amyloid fibrils probed by Magic‐Angle Spinning NMR of aromatic residues

Authors :
Becker, Lea Marie
Berbon, Mélanie
Vallet, Alicia
Grelard, Axelle
Morvan, Estelle
Bardiaux, Benjamin
Lichtenecker, Roman
Ernst, Matthias
Loquet, Antoine
Schanda, Paul
Institute of Science and Technology [Klosterneuburg, Austria] (IST Austria)
Institut Européen de Chimie et Biologie (IECB)
Université de Bordeaux (UB)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)
Institut de biologie structurale (IBS - UMR 5075)
Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche Interdisciplinaire de Grenoble (IRIG)
Direction de Recherche Fondamentale (CEA) (DRF (CEA))
Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Direction de Recherche Fondamentale (CEA) (DRF (CEA))
Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Grenoble Alpes (UGA)
Bioinformatique structurale - Structural Bioinformatics
Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité)
Universität Wien
Eidgenössische Technische Hochschule - Swiss Federal Institute of Technology [Zürich] (ETH Zürich)
This work was supported by funding from the European Research Council (StG-2012-311318 to P.S.) and used the platforms of the Grenoble Instruct-ERIC center (ISBG
UMS 3518 CNRS-CEA-UJF- EMBL) within the Grenoble Partnership for Structural Biology (PSB) and facilities and expertise of the Biophysical and Structural Chemistry platform (BPCS) at IECB, CNRS UAR3033, INSERM US001 and Bordeaux University
Source :
Angewandte Chemie International Edition, Angewandte Chemie International Edition, In press, ⟨10.1002/anie.202219314⟩
Publication Year :
2023
Publisher :
HAL CCSD, 2023.

Abstract

Dedicated to Robert Konrat, on the occasion of his 60th birthday. Aromatic side chains are important reporters of the plasticity of proteins, and often form important contacts in protein-protein interactions. We studied aromatic residues in the two structurally homologous cross-β amyloid fibrils HET-s, and HELLF by employing a specific isotope-labeling approach and magic-angle-spinning NMR. The dynamic behavior of the aromatic residues Phe and Tyr indicates that the hydrophobic amyloid core is rigid, without any sign of "breathing motions" over hundreds of milliseconds at least. Aromatic residues exposed at the fibril surface have a rigid ring axis but undergo ring flips on a variety of time scales from nanoseconds to microseconds. Our approach provides direct insight into hydrophobic-core motions, enabling a better evaluation of the conformational heterogeneity generated from an NMR structural ensemble of such amyloid cross-β architecture.

Details

Language :
English
ISSN :
14337851 and 15213773
Database :
OpenAIRE
Journal :
Angewandte Chemie International Edition, Angewandte Chemie International Edition, In press, ⟨10.1002/anie.202219314⟩
Accession number :
edsair.dedup.wf.001..c4d7975a9633c0679d7b793e069d2e27
Full Text :
https://doi.org/10.1002/anie.202219314⟩