Back to Search Start Over

The IUPHAR/BPS Guide to PHARMACOLOGY in 2016: towards curated quantitative interactions between 1300 protein targets and 6000 ligands

Authors :
Southan, Christopher
Sharman, Joanna L.
Benson, Helen E.
Faccenda, Elena
Pawson, Adam J.
Alexander, Stephen P.H.
Buneman, O. Peter
Davenport, Anthony P.
McGrath, John
Peters, John A.
Spedding, Michael
Catterall, William A.
Fabbro, Doriano
Davies, Jamie A.
Source :
Southan, C, Sharman, J, Benson, H E, Faccenda, E, Pawson, A J, Alexander, S P H, Buneman, P, Davenport, A P, McGrath, J C, Peters, J A, Spedding, M, Catterall, W A, Fabbro, D & Davies, J 2015, ' The IUPHAR/BPS Guide to PHARMACOLOGY in 2016: Towards curated quantitative interactions between 1300 protein targets and 6000 ligands ', Nucleic Acids Research . https://doi.org/10.1093/nar/gkv1037
Publication Year :
2016
Publisher :
Oxford University Press, 2016.

Abstract

The IUPHAR/BPS Guide to PHARMACOLOGY (GtoPdb, http://www.guidetopharmacology.org) provides expert-curated molecular interactions between successful and potential drugs and their targets in the human genome. Developed by the International Union of Basic and Clinical Pharmacology (IUPHAR) and the British Pharmacological Society (BPS), this resource, and its earlier incarnation as IUPHAR-DB, is described in our 2014 publication. This update incorporates changes over the intervening seven database releases. The unique model of content capture is based on established and new target class subcommittees collaborating with in-house curators. Most information comes from journal articles, but we now also index kinase cross-screening panels. Targets are specified by UniProtKB IDs. Small molecules are defined by PubChem Compound Identifiers (CIDs); ligand capture also includes peptides and clinical antibodies. We have extended the capture of ligands and targets linked via published quantitative binding data (e.g. Ki, IC50 or Kd). The resulting pharmacological relationship network now defines a data-supported druggable genome encompassing 7% of human proteins. The database also provides an expanded substrate for the biennially published compendium, the Concise Guide to PHARMACOLOGY. This article covers content increase, entity analysis, revised curation strategies, new website features and expanded download options.

Details

Language :
English
ISSN :
03051048 and 13624962
Database :
OpenAIRE
Journal :
Southan, C, Sharman, J, Benson, H E, Faccenda, E, Pawson, A J, Alexander, S P H, Buneman, P, Davenport, A P, McGrath, J C, Peters, J A, Spedding, M, Catterall, W A, Fabbro, D & Davies, J 2015, ' The IUPHAR/BPS Guide to PHARMACOLOGY in 2016: Towards curated quantitative interactions between 1300 protein targets and 6000 ligands ', Nucleic Acids Research . https://doi.org/10.1093/nar/gkv1037
Accession number :
edsair.dedup.wf.001..c1064f0b8b0e50d7e0d065f7b9b7a5e0
Full Text :
https://doi.org/10.1093/nar/gkv1037