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Data publication with the structural biology data grid supports live analysis
- Source :
- Datacite, DANS (Data Archiving and Networked Services), HAL-CEA, Publikationer från Uppsala Universitet, eScholarship-University of California, INRIA a CCSD electronic archive server, Konstanzer Online-Publikations-System, DSpace@MIT, Hyper Article en Ligne, Sygma, Zurich Open Repository and Archive, Digital Access to Scholarship at Harvard, PubMed Central, Mémoires en Sciences de l'Information et de la Communication, HAL-UPEC / UPEM, SNSF P3 Database, UnpayWall, ORCID, Microsoft Academic Graph, Apollo, HAL-Inserm, NARCIS, Europe PubMed Central, OpenAIRE, Repositório Aberto da Universidade do Porto, Meyer, PA; Socias, S; Key, J; Ransey, E; Tjon, EC; Buschiazzo, A; et al.(2016). Data publication with the structural biology data grid supports live analysis. Nature Communications, 7. doi: 10.1038/ncomms10882. UCLA: Retrieved from: http://www.escholarship.org/uc/item/9jx4r4s5, Nature Communications, Nature Publishing Group, 2016, 7, 〈10.1038/ncomms10882〉, Nature Communications, Nature Publishing Group, 2016, 7, ⟨10.1038/ncomms10882⟩, Nature Communications [E], 7, Meyer, Peter A; Socias, Stephanie; Key, Jason; Ransey, Elizabeth; Tjon, Emily C; Buschiazzo, Alejandro; Lei, Ming; Botka, Chris; Withrow, James; Neau, David; Rajashankar, Kanagalaghatta; Anderson, Karen S; Baxter, Richard H; Blacklow, Stephen C; Boggon, Titus J; Bonvin, Alexandre M J J; Borek, Dominika; Brett, Tom J; Caflisch, Amedeo; Chang, Chung-I; Chazin, Walter J; Corbett, Kevin D; Cosgrove, Michael S; Crosson, Sean; Dhe-Paganon, Sirano; Di Cera, Enrico; Drennan, Catherine L; Eck, Michael J; Eichman, Brandt F; Fan, Qing R; Ferré-D'Amaré, Adrian R; Christopher Fromme, J; Garcia, K Christopher; Gaudet, Rachelle; Gong, Peng; Harrison, Stephen C; Heldwein, Ekaterina E; Jia, Zongchao; Keenan, Robert J; Kruse, Andrew C; Kvansakul, Marc; McLellan, Jason S; Modis, Yorgo; Nam, Yunsun; Otwinowski, Zbyszek; Pai, Emil F; Pereira, Pedro José Barbosa; Petosa, Carlo; Raman, C S; Rapoport, Tom A; Roll-Mecak, Antonina; Rosen, Michael K; Rudenko, Gabby; Schlessinger, Joseph; Schwartz, Thomas U; Shamoo, Yousif; Sondermann, Holger; Tao, Yizhi J; Tolia, Niraj H; Tsodikov, Oleg V; Westover, Kenneth D; Wu, Hao; Foster, Ian; Fraser, James S; Maia, Filipe R N C; Gonen, Tamir; Kirchhausen, Tom; Diederichs, Kay; Crosas, Mercè; Sliz, Piotr (2016). Data publication with the structural biology data grid supports live analysis. Nature Communications, 7:10882., Nature Communications, Nature communications, vol 7, iss 1, Yousif Shamoo, Nature Publishing Group
- Publication Year :
- 2016
- Publisher :
- Nature Publishing Group, 2016.
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Abstract
- The validation and analysis of X-ray crystallographic data is essential for reproducibility and the development of crystallographic methods. Here, the authors describe a repository for crystallographic datasets and demonstrate some of the ways it could serve the crystallographic community.<br />Access to experimental X-ray diffraction image data is fundamental for validation and reproduction of macromolecular models and indispensable for development of structural biology processing methods. Here, we established a diffraction data publication and dissemination system, Structural Biology Data Grid (SBDG; data.sbgrid.org), to preserve primary experimental data sets that support scientific publications. Data sets are accessible to researchers through a community driven data grid, which facilitates global data access. Our analysis of a pilot collection of crystallographic data sets demonstrates that the information archived by SBDG is sufficient to reprocess data to statistics that meet or exceed the quality of the original published structures. SBDG has extended its services to the entire community and is used to develop support for other types of biomedical data sets. It is anticipated that access to the experimental data sets will enhance the paradigm shift in the community towards a much more dynamic body of continuously improving data analysis.
Details
- ISSN :
- 20411723
- Database :
- OpenAIRE
- Journal :
- Datacite, DANS (Data Archiving and Networked Services), HAL-CEA, Publikationer från Uppsala Universitet, eScholarship-University of California, INRIA a CCSD electronic archive server, Konstanzer Online-Publikations-System, DSpace@MIT, Hyper Article en Ligne, Sygma, Zurich Open Repository and Archive, Digital Access to Scholarship at Harvard, PubMed Central, Mémoires en Sciences de l'Information et de la Communication, HAL-UPEC / UPEM, SNSF P3 Database, UnpayWall, ORCID, Microsoft Academic Graph, Apollo, HAL-Inserm, NARCIS, Europe PubMed Central, OpenAIRE, Repositório Aberto da Universidade do Porto, Meyer, PA; Socias, S; Key, J; Ransey, E; Tjon, EC; Buschiazzo, A; et al.(2016). Data publication with the structural biology data grid supports live analysis. Nature Communications, 7. doi: 10.1038/ncomms10882. UCLA: Retrieved from: http://www.escholarship.org/uc/item/9jx4r4s5, Nature Communications, Nature Publishing Group, 2016, 7, 〈10.1038/ncomms10882〉, Nature Communications, Nature Publishing Group, 2016, 7, ⟨10.1038/ncomms10882⟩, Nature Communications [E], 7, Meyer, Peter A; Socias, Stephanie; Key, Jason; Ransey, Elizabeth; Tjon, Emily C; Buschiazzo, Alejandro; Lei, Ming; Botka, Chris; Withrow, James; Neau, David; Rajashankar, Kanagalaghatta; Anderson, Karen S; Baxter, Richard H; Blacklow, Stephen C; Boggon, Titus J; Bonvin, Alexandre M J J; Borek, Dominika; Brett, Tom J; Caflisch, Amedeo; Chang, Chung-I; Chazin, Walter J; Corbett, Kevin D; Cosgrove, Michael S; Crosson, Sean; Dhe-Paganon, Sirano; Di Cera, Enrico; Drennan, Catherine L; Eck, Michael J; Eichman, Brandt F; Fan, Qing R; Ferré-D'Amaré, Adrian R; Christopher Fromme, J; Garcia, K Christopher; Gaudet, Rachelle; Gong, Peng; Harrison, Stephen C; Heldwein, Ekaterina E; Jia, Zongchao; Keenan, Robert J; Kruse, Andrew C; Kvansakul, Marc; McLellan, Jason S; Modis, Yorgo; Nam, Yunsun; Otwinowski, Zbyszek; Pai, Emil F; Pereira, Pedro José Barbosa; Petosa, Carlo; Raman, C S; Rapoport, Tom A; Roll-Mecak, Antonina; Rosen, Michael K; Rudenko, Gabby; Schlessinger, Joseph; Schwartz, Thomas U; Shamoo, Yousif; Sondermann, Holger; Tao, Yizhi J; Tolia, Niraj H; Tsodikov, Oleg V; Westover, Kenneth D; Wu, Hao; Foster, Ian; Fraser, James S; Maia, Filipe R N C; Gonen, Tamir; Kirchhausen, Tom; Diederichs, Kay; Crosas, Mercè; Sliz, Piotr (2016). Data publication with the structural biology data grid supports live analysis. Nature Communications, 7:10882., Nature Communications, Nature communications, vol 7, iss 1, Yousif Shamoo, Nature Publishing Group
- Accession number :
- edsair.dedup.wf.001..766a01370e8ba6bb6c22fe26e0077076
- Full Text :
- https://doi.org/10.1038/ncomms10882.