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ACEGEN: Reinforcement Learning of Generative Chemical Agents for Drug Discovery

Authors :
Bou, Albert
Thomas, Morgan
Dittert, Sebastian
Navarro, Carles
Majewski, Maciej
Wang, Ye
Patel, Shivam
Tresadern, Gary
Ahmad, Mazen
Moens, Vincent
Sherman, Woody
Sciabola, Simone
De Fabritiis, Gianni
Source :
Journal of Chemical Information and Modeling; August 2024, Vol. 64 Issue: 15 p5900-5911, 12p
Publication Year :
2024

Abstract

In recent years, reinforcement learning (RL) has emerged as a valuable tool in drug design, offering the potential to propose and optimize molecules with desired properties. However, striking a balance between capabilities, flexibility, reliability, and efficiency remains challenging due to the complexity of advanced RL algorithms and the significant reliance on specialized code. In this work, we introduce ACEGEN, a comprehensive and streamlined toolkit tailored for generative drug design, built using TorchRL, a modern RL library that offers thoroughly tested reusable components. We validate ACEGEN by benchmarking against other published generative modeling algorithms and show comparable or improved performance. We also show examples of ACEGEN applied in multiple drug discovery case studies. ACEGEN is accessible at https://github.com/acellera/acegen-openand available for use under the MIT license.

Details

Language :
English
ISSN :
15499596 and 1549960X
Volume :
64
Issue :
15
Database :
Supplemental Index
Journal :
Journal of Chemical Information and Modeling
Publication Type :
Periodical
Accession number :
ejs67056598
Full Text :
https://doi.org/10.1021/acs.jcim.4c00895