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Commonalities across computational workflows for uncovering explanatory variants in undiagnosed cases
Authors :
Kobren, Shilpa Nadimpalli Baldridge, Dustin Velinder, Matt Krier, Joel B. LeBlanc, Kimberly Esteves, Cecilia Pusey, Barbara N. Züchner, Stephan Blue, Elizabeth Lee, Hane Huang, Alden Bastarache, Lisa Bican, Anna Cogan, Joy Marwaha, Shruti Alkelai, Anna Murdock, David R. Liu, Pengfei Wegner, Daniel J. Paul, Alexander J. Acosta, Maria T. Adam, Margaret Adams, David R. Agrawal, Pankaj B. Alejandro, Mercedes E. Alvey, Justin Amendola, Laura Andrews, Ashley Ashley, Euan A. Azamian, Mahshid S. Bacino, Carlos A. Bademci, Guney Baker, Eva Balasubramanyam, Ashok Baldridge, Dustin Bale, Jim Bamshad, Michael Barbouth, Deborah Bayrak-Toydemir, Pinar Beck, Anita Beggs, Alan H. Behrens, Edward Bejerano, Gill Bennett, Jimmy Berg-Rood, Beverly Bernstein, Jonathan A. Berry, Gerard T. Bican, Anna Bivona, Stephanie Blue, Elizabeth Bohnsack, John Bonnenmann, Carsten Bonner, Devon Botto, Lorenzo Boyd, Brenna Briere, Lauren C. Brokamp, Elly Brown, Gabrielle Burke, Elizabeth A. Burrage, Lindsay C. Butte, Manish J. Byers, Peter Byrd, William E. Carey, John Carrasquillo, Olveen Chang, Ta Chen Peter Chanprasert, Sirisak Chao, Hsiao-Tuan Clark, Gary D. Coakley, Terra R. Cobban, Laurel A. Cogan, Joy D. Coggins, Matthew Cole, F. Sessions Colley, Heather A. Cooper, Cynthia M. Cope, Heidi Craigen, William J. Crouse, Andrew B. Cunningham, Michael D’Souza, Precilla Dai, Hongzheng Dasari, Surendra Davis, Joie Daya, Jyoti G. Deardorff, Matthew Dell’Angelica, Esteban C. Dhar, Shweta U. Dipple, Katrina Doherty, Daniel Dorrani, Naghmeh Doss, Argenia L. Douine, Emilie D. Draper, David D. Duncan, Laura Earl, Dawn Eckstein, David J. Emrick, Lisa T. Eng, Christine M. Esteves, Cecilia Falk, Marni Fernandez, Liliana Ferreira, Carlos Fieg, Elizabeth L. Findley, Laurie C. Fisher, Paul G. Fogel, Brent L. Forghani, Irman Fresard, Laure Gahl, William A. Glass, Ian Gochuico, Bernadette Godfrey, Rena A. Golden-Grant, Katie Goldman, Alica M. Goldrich, Madison P. Goldstein, David B. Grajewski, Alana Groden, Catherine A. Gutierrez, Irma Hahn, Sihoun Hamid, Rizwan Hanchard, Neil A. Hassey, Kelly Hayes, Nichole High, Frances Hing, Anne Hisama, Fuki M. Holm, Ingrid A. Hom, Jason Horike-Pyne, Martha Huang, Alden Huang, Yong Huryn, Laryssa Isasi, Rosario Jamal, Fariha Jarvik, Gail P. Jarvik, Jeffrey Jayadev, Suman Karaviti, Lefkothea Kennedy, Jennifer Kiley, Dana Kohane, Isaac S. Kohler, Jennefer N. Korrick, Susan Kozuira, Mary Krakow, Deborah Krasnewich, Donna M. Kravets, Elijah Krier, Joel B. LaMoure, Grace L. Lalani, Seema R. Lam, Byron Lam, Christina Lanpher, Brendan C. Lanza, Ian R. Latham, Lea LeBlanc, Kimberly Lee, Brendan H. Lee, Hane Levitt, Roy Lewis, Richard A. Lincoln, Sharyn A. Liu, Pengfei Liu, Xue Zhong Longo, Nicola Loo, Sandra K. Loscalzo, Joseph Maas, Richard L. MacDowall, John MacRae, Calum A. Macnamara, Ellen F. Maduro, Valerie V. Majcherska, Marta M. Mak, Bryan C. Malicdan, May Christine V. Mamounas, Laura A. Manolio, Teri A. Mao, Rong Maravilla, Kenneth Markello, Thomas C. Marom, Ronit Marth, Gabor Martin, Beth A. Martin, Martin G. Martinez-Agosto, Julian A. Marwaha, Shruti McCauley, Jacob McConkie-Rosell, Allyn McCormack, Colleen E. McCray, Alexa T. McGee, Elisabeth Mefford, Heather Merritt, J. Lawrence Might, Matthew Mirzaa, Ghayda Morava, Eva Moretti, Paolo M. Moretti, Paolo Mosbrook-Davis, Deborah Mulvihill, John J. Murdock, David R. Nagy, Anna Nakano-Okuno, Mariko Nath, Avi Nelson, Stanley F. Newman, John H. Nicholas, Sarah K. Nickerson, Deborah Nieves-Rodriguez, Shirley Novacic, Donna Oglesbee, Devin Orengo, James P. Pace, Laura Pak, Stephen Pallais, J. Carl Palmer, Christina G.S. Papp, Jeanette C. Parker, Neil H. Phillips, John A. Posey, Jennifer E. Potocki, Lorraine Power, Bradley Pusey, Barbara N. Quinlan, Aaron Raja, Archana N. Rao, Deepak A. Raskind, Wendy Renteria, Genecee Reuter, Chloe M. Rives, Lynette Robertson, Amy K. Rodan, Lance H. Rosenfeld, Jill A. Rosenwasser, Natalie Rossignol, Francis Ruzhnikov, Maura Sacco, Ralph Sampson, Jacinda B. Samson, Susan L. Saporta, Mario Schaechter, Judy Schedl, Timothy Schoch, Kelly Scott, C. Ron Scott, Daryl A. Shashi, Vandana Shin, Jimann Signer, Rebecca H. Silverman, Edwin K. Sinsheimer, Janet S. Sisco, Kathy Smith, Edward C. Smith, Kevin S. Solem, Emily Solnica-Krezel, Lilianna Solomon, Ben Spillmann, Rebecca C. Stoler, Joan M. Sullivan, Jennifer A. Sullivan, Kathleen Sun, Angela Sutton, Shirley Sweetser, David A. Sybert, Virginia Tabor, Holly K. Tan, Amelia L.M. Tan, Queenie K.-G. Tekin, Mustafa Telischi, Fred Thorson, Willa Thurm, Audrey Tifft, Cynthia J. Toro, Camilo Tran, Alyssa A. Tucker, Brianna M. Urv, Tiina K. Vanderver, Adeline Velinder, Matt Viskochil, Dave Vogel, Tiphanie P. Wahl, Colleen E. Walker, Melissa Wallace, Stephanie Walley, Nicole M. Walsh, Chris A. Wambach, Jennifer Wan, Jijun Wang, Lee-kai Wangler, Michael F. Ward, Patricia A. Wegner, Daniel Wener, Mark Wenger, Tara Perry, Katherine Wesseling Westerfield, Monte Wheeler, Matthew T. Whitlock, Jordan Wolfe, Lynne A. Woods, Jeremy D. Yamamoto, Shinya Yang, John Yousef, Muhammad Zastrow, Diane B. Zein, Wadih Zhao, Chunli Zuchner, Stephan Sunyaev, Shamil R. Kohane, Isaac S.
Source :
Genetics in Medicine; June 2021, Vol. 23 Issue: 6 p1075-1085, 11p
Publication Year :
2021
Abstract
Genomic sequencing has become an increasingly powerful and relevant tool to be leveraged for the discovery of genetic aberrations underlying rare, Mendelian conditions. Although the computational tools incorporated into diagnostic workflows for this task are continually evolving and improving, we nevertheless sought to investigate commonalities across sequencing processing workflows to reveal consensus and standard practice tools and highlight exploratory analyses where technical and theoretical method improvements would be most impactful.
Details
Language :
English
ISSN :
10983600 and 15300366
Volume :
23
Issue :
6
Database :
Supplemental Index
Journal :
Genetics in Medicine
Publication Type :
Periodical
Accession number :
ejs59955508
Full Text :
https://doi.org/10.1038/s41436-020-01084-8