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Multi-ancestry genetic study of type 2 diabetes highlights the power of diverse populations for discovery and translation

Authors :
Mahajan, Anubha
Spracklen, Cassandra N.
Zhang, Weihua
Ng, Maggie C. Y.
Petty, Lauren E.
Kitajima, Hidetoshi
Yu, Grace Z.
Rüeger, Sina
Speidel, Leo
Kim, Young Jin
Horikoshi, Momoko
Mercader, Josep M.
Taliun, Daniel
Moon, Sanghoon
Kwak, Soo-Heon
Robertson, Neil R.
Rayner, Nigel W.
Loh, Marie
Kim, Bong-Jo
Chiou, Joshua
Miguel-Escalada, Irene
della Briotta Parolo, Pietro
Lin, Kuang
Bragg, Fiona
Preuss, Michael H.
Takeuchi, Fumihiko
Nano, Jana
Guo, Xiuqing
Lamri, Amel
Nakatochi, Masahiro
Scott, Robert A.
Lee, Jung-Jin
Huerta-Chagoya, Alicia
Graff, Mariaelisa
Chai, Jin-Fang
Parra, Esteban J.
Yao, Jie
Bielak, Lawrence F.
Tabara, Yasuharu
Hai, Yang
Steinthorsdottir, Valgerdur
Cook, James P.
Kals, Mart
Grarup, Niels
Schmidt, Ellen M.
Pan, Ian
Sofer, Tamar
Wuttke, Matthias
Sarnowski, Chloe
Gieger, Christian
Nousome, Darryl
Trompet, Stella
Long, Jirong
Sun, Meng
Tong, Lin
Chen, Wei-Min
Ahmad, Meraj
Noordam, Raymond
Lim, Victor J. Y.
Tam, Claudia H. T.
Joo, Yoonjung Yoonie
Chen, Chien-Hsiun
Raffield, Laura M.
Lecoeur, Cécile
Prins, Bram Peter
Nicolas, Aude
Yanek, Lisa R.
Chen, Guanjie
Jensen, Richard A.
Tajuddin, Salman
Kabagambe, Edmond K.
An, Ping
Xiang, Anny H.
Choi, Hyeok Sun
Cade, Brian E.
Tan, Jingyi
Flanagan, Jack
Abaitua, Fernando
Adair, Linda S.
Adeyemo, Adebowale
Aguilar-Salinas, Carlos A.
Akiyama, Masato
Anand, Sonia S.
Bertoni, Alain
Bian, Zheng
Bork-Jensen, Jette
Brandslund, Ivan
Brody, Jennifer A.
Brummett, Chad M.
Buchanan, Thomas A.
Canouil, Mickaël
Chan, Juliana C. N.
Chang, Li-Ching
Chee, Miao-Li
Chen, Ji
Chen, Shyh-Huei
Chen, Yuan-Tsong
Chen, Zhengming
Chuang, Lee-Ming
Cushman, Mary
Das, Swapan K.
de Silva, H. Janaka
Dedoussis, George
Dimitrov, Latchezar
Doumatey, Ayo P.
Du, Shufa
Duan, Qing
Eckardt, Kai-Uwe
Emery, Leslie S.
Evans, Daniel S.
Evans, Michele K.
Fischer, Krista
Floyd, James S.
Ford, Ian
Fornage, Myriam
Franco, Oscar H.
Frayling, Timothy M.
Freedman, Barry I.
Fuchsberger, Christian
Genter, Pauline
Gerstein, Hertzel C.
Giedraitis, Vilmantas
González-Villalpando, Clicerio
González-Villalpando, Maria Elena
Goodarzi, Mark O.
Gordon-Larsen, Penny
Gorkin, David
Gross, Myron
Guo, Yu
Hackinger, Sophie
Han, Sohee
Hattersley, Andrew T.
Herder, Christian
Howard, Annie-Green
Hsueh, Willa
Huang, Mengna
Huang, Wei
Hung, Yi-Jen
Hwang, Mi Yeong
Hwu, Chii-Min
Ichihara, Sahoko
Ikram, Mohammad Arfan
Ingelsson, Martin
Islam, Md Tariqul
Isono, Masato
Jang, Hye-Mi
Jasmine, Farzana
Jiang, Guozhi
Jonas, Jost B.
Jørgensen, Marit E.
Jørgensen, Torben
Kamatani, Yoichiro
Kandeel, Fouad R.
Kasturiratne, Anuradhani
Katsuya, Tomohiro
Kaur, Varinderpal
Kawaguchi, Takahisa
Keaton, Jacob M.
Kho, Abel N.
Khor, Chiea-Chuen
Kibriya, Muhammad G.
Kim, Duk-Hwan
Kohara, Katsuhiko
Kriebel, Jennifer
Kronenberg, Florian
Kuusisto, Johanna
Läll, Kristi
Lange, Leslie A.
Lee, Myung-Shik
Lee, Nanette R.
Leong, Aaron
Li, Liming
Li, Yun
Li-Gao, Ruifang
Ligthart, Symen
Lindgren, Cecilia M.
Linneberg, Allan
Liu, Ching-Ti
Liu, Jianjun
Locke, Adam E.
Louie, Tin
Luan, Jian’an
Luk, Andrea O.
Luo, Xi
Lv, Jun
Lyssenko, Valeriya
Mamakou, Vasiliki
Mani, K. Radha
Meitinger, Thomas
Metspalu, Andres
Morris, Andrew D.
Nadkarni, Girish N.
Nadler, Jerry L.
Nalls, Michael A.
Nayak, Uma
Nongmaithem, Suraj S.
Ntalla, Ioanna
Okada, Yukinori
Orozco, Lorena
Patel, Sanjay R.
Pereira, Mark A.
Peters, Annette
Pirie, Fraser J.
Porneala, Bianca
Prasad, Gauri
Preissl, Sebastian
Rasmussen-Torvik, Laura J.
Reiner, Alexander P.
Roden, Michael
Rohde, Rebecca
Roll, Kathryn
Sabanayagam, Charumathi
Sander, Maike
Sandow, Kevin
Sattar, Naveed
Schönherr, Sebastian
Schurmann, Claudia
Shahriar, Mohammad
Shi, Jinxiu
Shin, Dong Mun
Shriner, Daniel
Smith, Jennifer A.
So, Wing Yee
Stančáková, Alena
Stilp, Adrienne M.
Strauch, Konstantin
Suzuki, Ken
Takahashi, Atsushi
Taylor, Kent D.
Thorand, Barbara
Thorleifsson, Gudmar
Thorsteinsdottir, Unnur
Tomlinson, Brian
Torres, Jason M.
Tsai, Fuu-Jen
Tuomilehto, Jaakko
Tusie-Luna, Teresa
Udler, Miriam S.
Valladares-Salgado, Adan
van Dam, Rob M.
van Klinken, Jan B.
Varma, Rohit
Vujkovic, Marijana
Wacher-Rodarte, Niels
Wheeler, Eleanor
Whitsel, Eric A.
Wickremasinghe, Ananda R.
van Dijk, Ko Willems
Witte, Daniel R.
Yajnik, Chittaranjan S.
Yamamoto, Ken
Yamauchi, Toshimasa
Yengo, Loïc
Yoon, Kyungheon
Yu, Canqing
Yuan, Jian-Min
Yusuf, Salim
Zhang, Liang
Zheng, Wei
Raffel, Leslie J.
Igase, Michiya
Ipp, Eli
Redline, Susan
Cho, Yoon Shin
Lind, Lars
Province, Michael A.
Hanis, Craig L.
Peyser, Patricia A.
Ingelsson, Erik
Zonderman, Alan B.
Psaty, Bruce M.
Wang, Ya-Xing
Rotimi, Charles N.
Becker, Diane M.
Matsuda, Fumihiko
Liu, Yongmei
Zeggini, Eleftheria
Yokota, Mitsuhiro
Rich, Stephen S.
Kooperberg, Charles
Pankow, James S.
Engert, James C.
Chen, Yii-Der Ida
Froguel, Philippe
Wilson, James G.
Sheu, Wayne H. H.
Kardia, Sharon L. R.
Wu, Jer-Yuarn
Hayes, M. Geoffrey
Ma, Ronald C. W.
Wong, Tien-Yin
Groop, Leif
Mook-Kanamori, Dennis O.
Chandak, Giriraj R.
Collins, Francis S.
Bharadwaj, Dwaipayan
Paré, Guillaume
Sale, Michèle M.
Ahsan, Habibul
Motala, Ayesha A.
Shu, Xiao-Ou
Park, Kyong-Soo
Jukema, J. Wouter
Cruz, Miguel
McKean-Cowdin, Roberta
Grallert, Harald
Cheng, Ching-Yu
Bottinger, Erwin P.
Dehghan, Abbas
Tai, E-Shyong
Dupuis, Josée
Kato, Norihiro
Laakso, Markku
Köttgen, Anna
Koh, Woon-Puay
Palmer, Colin N. A.
Liu, Simin
Abecasis, Goncalo
Kooner, Jaspal S.
Loos, Ruth J. F.
North, Kari E.
Haiman, Christopher A.
Florez, Jose C.
Saleheen, Danish
Hansen, Torben
Pedersen, Oluf
Mägi, Reedik
Langenberg, Claudia
Wareham, Nicholas J.
Maeda, Shiro
Kadowaki, Takashi
Lee, Juyoung
Millwood, Iona Y.
Walters, Robin G.
Stefansson, Kari
Myers, Simon R.
Ferrer, Jorge
Gaulton, Kyle J.
Meigs, James B.
Mohlke, Karen L.
Gloyn, Anna L.
Bowden, Donald W.
Below, Jennifer E.
Chambers, John C.
Sim, Xueling
Boehnke, Michael
Rotter, Jerome I.
McCarthy, Mark I.
Morris, Andrew P.
Source :
Nature Genetics; 20220101, Issue: Preprints p1-13, 13p
Publication Year :
2022

Abstract

We assembled an ancestrally diverse collection of genome-wide association studies (GWAS) of type 2 diabetes (T2D) in 180,834 affected individuals and 1,159,055 controls (48.9% non-European descent) through the Diabetes Meta-Analysis of Trans-Ethnic association studies (DIAMANTE) Consortium. Multi-ancestry GWAS meta-analysis identified 237 loci attaining stringent genome-wide significance (P< 5 × 10−9), which were delineated to 338 distinct association signals. Fine-mapping of these signals was enhanced by the increased sample size and expanded population diversity of the multi-ancestry meta-analysis, which localized 54.4% of T2D associations to a single variant with >50% posterior probability. This improved fine-mapping enabled systematic assessment of candidate causal genes and molecular mechanisms through which T2D associations are mediated, laying the foundations for functional investigations. Multi-ancestry genetic risk scores enhanced transferability of T2D prediction across diverse populations. Our study provides a step toward more effective clinical translation of T2D GWAS to improve global health for all, irrespective of genetic background.

Details

Language :
English
ISSN :
10614036 and 15461718
Issue :
Preprints
Database :
Supplemental Index
Journal :
Nature Genetics
Publication Type :
Periodical
Accession number :
ejs59666109
Full Text :
https://doi.org/10.1038/s41588-022-01058-3