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Multi-ancestry genetic study of type 2 diabetes highlights the power of diverse populations for discovery and translation
Authors :
Mahajan, Anubha Spracklen, Cassandra N. Zhang, Weihua Ng, Maggie C. Y. Petty, Lauren E. Kitajima, Hidetoshi Yu, Grace Z. Rüeger, Sina Speidel, Leo Kim, Young Jin Horikoshi, Momoko Mercader, Josep M. Taliun, Daniel Moon, Sanghoon Kwak, Soo-Heon Robertson, Neil R. Rayner, Nigel W. Loh, Marie Kim, Bong-Jo Chiou, Joshua Miguel-Escalada, Irene della Briotta Parolo, Pietro Lin, Kuang Bragg, Fiona Preuss, Michael H. Takeuchi, Fumihiko Nano, Jana Guo, Xiuqing Lamri, Amel Nakatochi, Masahiro Scott, Robert A. Lee, Jung-Jin Huerta-Chagoya, Alicia Graff, Mariaelisa Chai, Jin-Fang Parra, Esteban J. Yao, Jie Bielak, Lawrence F. Tabara, Yasuharu Hai, Yang Steinthorsdottir, Valgerdur Cook, James P. Kals, Mart Grarup, Niels Schmidt, Ellen M. Pan, Ian Sofer, Tamar Wuttke, Matthias Sarnowski, Chloe Gieger, Christian Nousome, Darryl Trompet, Stella Long, Jirong Sun, Meng Tong, Lin Chen, Wei-Min Ahmad, Meraj Noordam, Raymond Lim, Victor J. Y. Tam, Claudia H. T. Joo, Yoonjung Yoonie Chen, Chien-Hsiun Raffield, Laura M. Lecoeur, Cécile Prins, Bram Peter Nicolas, Aude Yanek, Lisa R. Chen, Guanjie Jensen, Richard A. Tajuddin, Salman Kabagambe, Edmond K. An, Ping Xiang, Anny H. Choi, Hyeok Sun Cade, Brian E. Tan, Jingyi Flanagan, Jack Abaitua, Fernando Adair, Linda S. Adeyemo, Adebowale Aguilar-Salinas, Carlos A. Akiyama, Masato Anand, Sonia S. Bertoni, Alain Bian, Zheng Bork-Jensen, Jette Brandslund, Ivan Brody, Jennifer A. Brummett, Chad M. Buchanan, Thomas A. Canouil, Mickaël Chan, Juliana C. N. Chang, Li-Ching Chee, Miao-Li Chen, Ji Chen, Shyh-Huei Chen, Yuan-Tsong Chen, Zhengming Chuang, Lee-Ming Cushman, Mary Das, Swapan K. de Silva, H. Janaka Dedoussis, George Dimitrov, Latchezar Doumatey, Ayo P. Du, Shufa Duan, Qing Eckardt, Kai-Uwe Emery, Leslie S. Evans, Daniel S. Evans, Michele K. Fischer, Krista Floyd, James S. Ford, Ian Fornage, Myriam Franco, Oscar H. Frayling, Timothy M. Freedman, Barry I. Fuchsberger, Christian Genter, Pauline Gerstein, Hertzel C. Giedraitis, Vilmantas González-Villalpando, Clicerio González-Villalpando, Maria Elena Goodarzi, Mark O. Gordon-Larsen, Penny Gorkin, David Gross, Myron Guo, Yu Hackinger, Sophie Han, Sohee Hattersley, Andrew T. Herder, Christian Howard, Annie-Green Hsueh, Willa Huang, Mengna Huang, Wei Hung, Yi-Jen Hwang, Mi Yeong Hwu, Chii-Min Ichihara, Sahoko Ikram, Mohammad Arfan Ingelsson, Martin Islam, Md Tariqul Isono, Masato Jang, Hye-Mi Jasmine, Farzana Jiang, Guozhi Jonas, Jost B. Jørgensen, Marit E. Jørgensen, Torben Kamatani, Yoichiro Kandeel, Fouad R. Kasturiratne, Anuradhani Katsuya, Tomohiro Kaur, Varinderpal Kawaguchi, Takahisa Keaton, Jacob M. Kho, Abel N. Khor, Chiea-Chuen Kibriya, Muhammad G. Kim, Duk-Hwan Kohara, Katsuhiko Kriebel, Jennifer Kronenberg, Florian Kuusisto, Johanna Läll, Kristi Lange, Leslie A. Lee, Myung-Shik Lee, Nanette R. Leong, Aaron Li, Liming Li, Yun Li-Gao, Ruifang Ligthart, Symen Lindgren, Cecilia M. Linneberg, Allan Liu, Ching-Ti Liu, Jianjun Locke, Adam E. Louie, Tin Luan, Jian’an Luk, Andrea O. Luo, Xi Lv, Jun Lyssenko, Valeriya Mamakou, Vasiliki Mani, K. Radha Meitinger, Thomas Metspalu, Andres Morris, Andrew D. Nadkarni, Girish N. Nadler, Jerry L. Nalls, Michael A. Nayak, Uma Nongmaithem, Suraj S. Ntalla, Ioanna Okada, Yukinori Orozco, Lorena Patel, Sanjay R. Pereira, Mark A. Peters, Annette Pirie, Fraser J. Porneala, Bianca Prasad, Gauri Preissl, Sebastian Rasmussen-Torvik, Laura J. Reiner, Alexander P. Roden, Michael Rohde, Rebecca Roll, Kathryn Sabanayagam, Charumathi Sander, Maike Sandow, Kevin Sattar, Naveed Schönherr, Sebastian Schurmann, Claudia Shahriar, Mohammad Shi, Jinxiu Shin, Dong Mun Shriner, Daniel Smith, Jennifer A. So, Wing Yee Stančáková, Alena Stilp, Adrienne M. Strauch, Konstantin Suzuki, Ken Takahashi, Atsushi Taylor, Kent D. Thorand, Barbara Thorleifsson, Gudmar Thorsteinsdottir, Unnur Tomlinson, Brian Torres, Jason M. Tsai, Fuu-Jen Tuomilehto, Jaakko Tusie-Luna, Teresa Udler, Miriam S. Valladares-Salgado, Adan van Dam, Rob M. van Klinken, Jan B. Varma, Rohit Vujkovic, Marijana Wacher-Rodarte, Niels Wheeler, Eleanor Whitsel, Eric A. Wickremasinghe, Ananda R. van Dijk, Ko Willems Witte, Daniel R. Yajnik, Chittaranjan S. Yamamoto, Ken Yamauchi, Toshimasa Yengo, Loïc Yoon, Kyungheon Yu, Canqing Yuan, Jian-Min Yusuf, Salim Zhang, Liang Zheng, Wei Raffel, Leslie J. Igase, Michiya Ipp, Eli Redline, Susan Cho, Yoon Shin Lind, Lars Province, Michael A. Hanis, Craig L. Peyser, Patricia A. Ingelsson, Erik Zonderman, Alan B. Psaty, Bruce M. Wang, Ya-Xing Rotimi, Charles N. Becker, Diane M. Matsuda, Fumihiko Liu, Yongmei Zeggini, Eleftheria Yokota, Mitsuhiro Rich, Stephen S. Kooperberg, Charles Pankow, James S. Engert, James C. Chen, Yii-Der Ida Froguel, Philippe Wilson, James G. Sheu, Wayne H. H. Kardia, Sharon L. R. Wu, Jer-Yuarn Hayes, M. Geoffrey Ma, Ronald C. W. Wong, Tien-Yin Groop, Leif Mook-Kanamori, Dennis O. Chandak, Giriraj R. Collins, Francis S. Bharadwaj, Dwaipayan Paré, Guillaume Sale, Michèle M. Ahsan, Habibul Motala, Ayesha A. Shu, Xiao-Ou Park, Kyong-Soo Jukema, J. Wouter Cruz, Miguel McKean-Cowdin, Roberta Grallert, Harald Cheng, Ching-Yu Bottinger, Erwin P. Dehghan, Abbas Tai, E-Shyong Dupuis, Josée Kato, Norihiro Laakso, Markku Köttgen, Anna Koh, Woon-Puay Palmer, Colin N. A. Liu, Simin Abecasis, Goncalo Kooner, Jaspal S. Loos, Ruth J. F. North, Kari E. Haiman, Christopher A. Florez, Jose C. Saleheen, Danish Hansen, Torben Pedersen, Oluf Mägi, Reedik Langenberg, Claudia Wareham, Nicholas J. Maeda, Shiro Kadowaki, Takashi Lee, Juyoung Millwood, Iona Y. Walters, Robin G. Stefansson, Kari Myers, Simon R. Ferrer, Jorge Gaulton, Kyle J. Meigs, James B. Mohlke, Karen L. Gloyn, Anna L. Bowden, Donald W. Below, Jennifer E. Chambers, John C. Sim, Xueling Boehnke, Michael Rotter, Jerome I. McCarthy, Mark I. Morris, Andrew P.
Source :
Nature Genetics; 20220101, Issue: Preprints p1-13, 13p
Publication Year :
2022
Abstract
We assembled an ancestrally diverse collection of genome-wide association studies (GWAS) of type 2 diabetes (T2D) in 180,834 affected individuals and 1,159,055 controls (48.9% non-European descent) through the Diabetes Meta-Analysis of Trans-Ethnic association studies (DIAMANTE) Consortium. Multi-ancestry GWAS meta-analysis identified 237 loci attaining stringent genome-wide significance (P< 5 × 10−9), which were delineated to 338 distinct association signals. Fine-mapping of these signals was enhanced by the increased sample size and expanded population diversity of the multi-ancestry meta-analysis, which localized 54.4% of T2D associations to a single variant with >50% posterior probability. This improved fine-mapping enabled systematic assessment of candidate causal genes and molecular mechanisms through which T2D associations are mediated, laying the foundations for functional investigations. Multi-ancestry genetic risk scores enhanced transferability of T2D prediction across diverse populations. Our study provides a step toward more effective clinical translation of T2D GWAS to improve global health for all, irrespective of genetic background.
Details
Language :
English
ISSN :
10614036 and 15461718
Issue :
Preprints
Database :
Supplemental Index
Journal :
Nature Genetics
Publication Type :
Periodical
Accession number :
ejs59666109
Full Text :
https://doi.org/10.1038/s41588-022-01058-3