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Quantifying prediction of pathogenicity for within-codon concordance (PM5) using 7541 functional classifications of BRCA1and MSH2missense variants

Authors :
Loong, Lucy
Cubuk, Cankut
Choi, Subin
Allen, Sophie
Torr, Beth
Garrett, Alice
Loveday, Chey
Durkie, Miranda
Callaway, Alison
Burghel, George J.
Drummond, James
Robinson, Rachel
Berry, Ian R.
Wallace, Andrew
Eccles, Diana M.
Tischkowitz, Marc
Ellard, Sian
Ware, James S.
Hanson, Helen
Turnbull, Clare
Samant, S.
Lucassen, A.
Znaczko, A.
Shaw, A.
Ansari, A.
Kumar, A.
Donaldson, A.
Murray, A.
Ross, A.
Taylor-Beadling, A.
Taylor, A.
Innes, A.
Brady, A.
Kulkarni, A.
Hogg, A.-C.
Bowden, A. Ramsay
Hadonou, A.
Coad, B.
McIldowie, B.
Speight, B.
DeSouza, B.
Mullaney, B.
McKenna, C.
Brewer, C.
Olimpio, C.
Clabby, C.
Crosby, C.
Jenkins, C.
Armstrong, C.
Bowles, C.
Brooks, C.
Byrne, C.
Maurer, C.
Baralle, D.
Chubb, D.
Stobo, D.
Moore, D.
O'Sullivan, D.
Donnelly, D.
Randhawa, D.
Halliday, D.
Atkinson, E.
Baple, E.
Rauter, E.
Johnston, E.
Woodward, E.
Maher, E.
Sofianopoulou, E.
Petrides, E.
Lalloo, F.
McRonald, F.
Pelz, F.
Frayling, I.
Evans, G.
Corbett, G.
Rea, G.
Clouston, H.
Powell, H.
Williamson, H.
Carley, H.
Thomas, H.J.W.
Tomlinson, I.
Cook, J.
Hoyle, J.
Tellez, J.
Whitworth, J.
Williams, J.
Murray, J.
Campbell, J.
Tolmie, J.
Field, J.
Mason, J.
Burn, J.
Bruty, J.
Callaway, J.
Grant, J.
Del Rey Jimenez, J.
Pagan, J.
VanCampen, J.
Barwell, J.
Monahan, K.
Tatton-Brown, K.
Ong, K.-R.
Murphy, K.
Andrews, K.
Mokretar, K.
Cadoo, K.
Smith, K.
Baker, K.
Brown, K.
Reay, K.
McKay Bounford, K.
Bradshaw, K.
Russell, K.
Stone, K.
Snape, K.
Crookes, L.
Reed, L.
Taggart, L.
Yarram, L.
Cobbold, L.
Walker, L.
Walker, L.
Hawkes, L.
Busby, L.
Izatt, L.
Kiely, L.
Hughes, L.
Side, L.
Sarkies, L.
Greenhalgh, K.-L.
Shanmugasundaram, M.
Duff, M.
Bartlett, M.
Watson, M.
Owens, M.
Bradford, M.
Huxley, M.
Slean, M.
Ryten, M.
Smith, M.
Ahmed, M.
Roberts, N.
O'Brien, C.
Middleton, O.
Tarpey, P.
Logan, P.
Dean, P.
May, P.
Brace, P.
Tredwell, R.
Harrison, R.
Hart, R.
Kirk, R.
Martin, R.
Nyanhete, R.
Wright, R.
Martin, R.
Davidson, R.
Cleaver, R.
Talukdar, S.
Butler, S.
Sampson, J.
Ribeiro, S.
Dell, S.
Mackenzie, S.
Hegarty, S.
Albaba, S.
McKee, S.
Palmer-Smith, S.
Heggarty, S.
MacParland, S.
Greville-Heygate, S.
Daniels, S.
Prapa, S.
Abbs, S.
Tennant, S.
Hardy, S.
MacMahon, S.
McVeigh, T.
Foo, T.
Bedenham, T.
Cranston, T.
McDevitt, T.
Clowes, V.
Tripathi, V.
McConnell, V.
Woodwaer, N.
Wallis, Y.
Kemp, Z.
Mullan, G.
Pierson, L.
Rainey, L.
Joyce, C.
Timbs, A.
Reuther, A.-M.
Frugtniet, B.
DeSouza, B.
Husher, C.
Lawn, C.
Corbett, C.
Nocera-Jijon, D.
Reay, D.
Cross, E.
Ryan, F.
Lindsay, H.
Oliver, J.
Dring, J.
Spiers, J.
Harper, J.
Ciucias, K.
Connolly, L.
Tsang, M.
Brown, R.
Shepherd, S.
Begum, S.
Daniels, S.
Tadiso, T.
Linton-Willoughby, T.
Heppell, H.
Sahan, K.
Worrillow, L.
Allen, Z.
Barlett, M.
Watt, C.
Hegarty, M.
Source :
Genetics in Medicine; March 2022, Vol. 24 Issue: 3 p552-563, 12p
Publication Year :
2022

Abstract

Conditions and thresholds applied for evidence weighting of within-codon concordance (PM5) for pathogenicity vary widely between laboratories and expert groups. Because of the sparseness of available clinical classifications, there is little evidence for variation in practice.

Details

Language :
English
ISSN :
10983600 and 15300366
Volume :
24
Issue :
3
Database :
Supplemental Index
Journal :
Genetics in Medicine
Publication Type :
Periodical
Accession number :
ejs58800161
Full Text :
https://doi.org/10.1016/j.gim.2021.11.011