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de novotranscriptome profile of two earthworms Lampito mauritiiand Drawida calebiduring regeneration

Authors :
Sahu, Ranjan
Sahu, Sanjat Kumar
Nishank, Sudhansu Sekhar
Source :
Biochemistry and Biophysics Reports; September 2021, Vol. 27 Issue: 1
Publication Year :
2021

Abstract

Earthworms have remarkable ability to regenerate its tail and head region. However the list of genes expressed in this regeneration process has been less explored baring a few species. The current study involves the de novotranscriptome sequencing of intact tail and regenerating tail (15 day post amputation) of earthworms belonging to two different genera Lampito mauritii(Kinberg, 1867) and Drawida calebi(Gates, 1945). This study contains one de-novoand one reference based transcriptome analysis each from one genus of two earthworm genera. From a total of 119.92 million (150 × 2) reads, 112.95 million high quality adapter free reads were utilized in analysis. Assembly of high-quality reads was performed separately for Lampito mauritii(LM sample) and Drawida calebi(DC sample) that resulted in 66368 and 1,61,289 transcripts respectively. About 25.21% of transcripts were functionally annotated for DC sample and 38.27% for LM samples against Annelida sequences. A total of 239 genes were expressed exclusively in regenerated tissue compared to intact sample in DC whereas about 241 genes were exclusively expressed in regenerated tissue of LM compared to its intact sample. Majority of genes in Drawidaand Lampitowere dedicated to immune response, maintenance of cytoskeleton, resisting oxidative stress and promoting neuronal regeneration for cell-cell communication during tail regeneration.

Details

Language :
English
ISSN :
24055808
Volume :
27
Issue :
1
Database :
Supplemental Index
Journal :
Biochemistry and Biophysics Reports
Publication Type :
Periodical
Accession number :
ejs57337952
Full Text :
https://doi.org/10.1016/j.bbrep.2021.101092