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Diagnosis of SARS-CoV-2 Infection with LamPORE, a High-Throughput Platform Combining Loop-Mediated Isothermal Amplification and Nanopore Sequencing

Authors :
Peto, Leon
Rodger, Gillian
Carter, Daniel P.
Osman, Karen L.
Yavuz, Mehmet
Johnson, Katie
Raza, Mohammad
Parker, Matthew D.
Wyles, Matthew D.
Andersson, Monique
Justice, Anita
Vaughan, Alison
Hoosdally, Sarah
Stoesser, Nicole
Matthews, Philippa C.
Eyre, David W.
Peto, Timothy E. A.
Carroll, Miles W.
de Silva, Thushan I.
Crook, Derrick W.
Evans, Cariad M.
Pullan, Steven T.
Source :
Journal of Clinical Microbiology; May 2021, Vol. 59 Issue: 6
Publication Year :
2021

Abstract

LamPORE is a novel diagnostic platform for the detection of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) RNA combining loop-mediated isothermal amplification with Nanopore sequencing, which could potentially be used to analyze thousands of samples per day on a single instrument. We evaluated the performance of LamPORE against reverse transcriptase PCR (RT-PCR) using RNA extracted from spiked respiratory samples and stored nose and throat swabs collected at two UK hospitals.

Details

Language :
English
ISSN :
00951137 and 1098660X
Volume :
59
Issue :
6
Database :
Supplemental Index
Journal :
Journal of Clinical Microbiology
Publication Type :
Periodical
Accession number :
ejs56379573
Full Text :
https://doi.org/10.1128/JCM.03271-20