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A complete genome assembly of Glaciecola mesophilasp. nov. sequenced by using BIGIS-4 sequencer system

Authors :
Yuan, LiNa
Ren, LuFeng
Li, YunTao
Han, WeiJing
Yu, Yong
Chu, YaNan
Liu, GuiMing
Yu, Dan
Teng, MingJing
Wang, Liang
Wang, XuMin
Zhou, XiaoGuang
Yu, YuDe
Yu, Jun
Source :
SCIENCE CHINA Life Sciences; September 2011, Vol. 54 Issue: 9 p835-840, 6p
Publication Year :
2011

Abstract

Using a pyrosequencing-based custom-made sequencer BIGIS-4, we sequenced a Gram-negative bacterium Glaciecola mesophilasp. nov. (Gmn) isolated from marine invertebrate specimens. We generated 152043 sequencing reads with a mean high-quality length of 406 bp, and assembled them using the BIGIS-4 post-processing module. No systematic low-quality data was detected beyond expected homopolymer-derived errors. The assembled Gmngenome is 5144318 bp in length and harbors 4303 annotated genes. A large number of metabolic genes correspond to various nutrients from surface marine invertebrates. Its abundant cold-tolerant and cellular signaling and related genes reveal a fundamental adaptation to low-temperature marine environment.

Details

Language :
English
ISSN :
16747305 and 18691889
Volume :
54
Issue :
9
Database :
Supplemental Index
Journal :
SCIENCE CHINA Life Sciences
Publication Type :
Periodical
Accession number :
ejs25563059
Full Text :
https://doi.org/10.1007/s11427-011-4211-9