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A complete genome assembly of Glaciecola mesophilasp. nov. sequenced by using BIGIS-4 sequencer system
- Source :
- SCIENCE CHINA Life Sciences; September 2011, Vol. 54 Issue: 9 p835-840, 6p
- Publication Year :
- 2011
-
Abstract
- Using a pyrosequencing-based custom-made sequencer BIGIS-4, we sequenced a Gram-negative bacterium Glaciecola mesophilasp. nov. (Gmn) isolated from marine invertebrate specimens. We generated 152043 sequencing reads with a mean high-quality length of 406 bp, and assembled them using the BIGIS-4 post-processing module. No systematic low-quality data was detected beyond expected homopolymer-derived errors. The assembled Gmngenome is 5144318 bp in length and harbors 4303 annotated genes. A large number of metabolic genes correspond to various nutrients from surface marine invertebrates. Its abundant cold-tolerant and cellular signaling and related genes reveal a fundamental adaptation to low-temperature marine environment.
Details
- Language :
- English
- ISSN :
- 16747305 and 18691889
- Volume :
- 54
- Issue :
- 9
- Database :
- Supplemental Index
- Journal :
- SCIENCE CHINA Life Sciences
- Publication Type :
- Periodical
- Accession number :
- ejs25563059
- Full Text :
- https://doi.org/10.1007/s11427-011-4211-9