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A rapid method for mapping exposed cytosines in polyribonucleotides. Application to tRNATrp (yeast, beef liver)
- Source :
- Molecular Biology Reports; July 1980, Vol. 6 Issue: 2 p83-87, 5p
- Publication Year :
- 1980
-
Abstract
- A rapid method for mapping exposed cytosine residues in 5'-[<superscript>32</superscript>P]-labeled RNA molecules is suggested. The exposed cytosines (C's) are converted into uracyls (U's) by bisulphite treatment at pH 5.8 in the presence of Mg<superscript>2+</superscript>, followed by complete modification of the residual (non-exposed) C's by a methoxyamine and bisulphite mixture at pH 5.0. The control RNA is modified only by methoxyamine and bisulphite without the preliminary C?U conversion. The location of the exposed C's is determined by comparing the products of partial T<subscript>1</subscript>, T<subscript>2</subscript>, A and U<subscript>2</subscript> ribonuclease digestions of the C ? U converted and control RNAs after slab gel polyacrylamide electrophoresis and autoradiography. The method has been applied for mapping exposed cytosine bases in tRNA<superscript>Trp</superscript> (yeast) which have been found in the anticodon loop and at the 3'-end of the molecule. In tRNA<superscript>Trp</superscript> (beef liver), in addition to the same exposed bases, C in the diHU-loop is exposed. The data obtained are in full agreement with that is known about exposed C's for other tRNAs.
Details
- Language :
- English
- ISSN :
- 03014851 and 15734978
- Volume :
- 6
- Issue :
- 2
- Database :
- Supplemental Index
- Journal :
- Molecular Biology Reports
- Publication Type :
- Periodical
- Accession number :
- ejs15036886
- Full Text :
- https://doi.org/10.1007/BF00778434