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An Intermediate Language for the Simulation of Biological Systems.

Authors :
Barbuti, Roberto
Caravagna, Giulio
Maggiolo–Schettini, Andrea
Milazzo, Paolo
Source :
ENTCS: Electronic Notes in Theoretical Computer Science; Jan2008, Vol. 194 Issue 3, p19-34, 16p
Publication Year :
2008

Abstract

Abstract: We propose String MultiSet Rewriting (SMSR) as an intermediate language for simulation of biomolecular systems. Higher level formalisms for biological systems description can be translated into SMSR and SMSR descriptions can be simulated by adapting an existing simulator. In this paper we show the translation of one of these formalisms, CLS+, into SMSR, and we prove correctness and completeness of the translation. [Copyright &y& Elsevier]

Details

Language :
English
ISSN :
15710661
Volume :
194
Issue :
3
Database :
Supplemental Index
Journal :
ENTCS: Electronic Notes in Theoretical Computer Science
Publication Type :
Periodical
Accession number :
28803124
Full Text :
https://doi.org/10.1016/j.entcs.2007.12.004